Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000063-TA|BGIBMGA000063-PA|IPR000488|Death,
IPR000719|Protein kinase, IPR011009|Protein kinase-like,
IPR011029|DEATH-like, IPR008271|Serine/threonine protein kinase,
active site, IPR002290|Serine/threonine protein kinase
         (361 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    27   0.21 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 275 VARGLQFLHTMTGSALIHGDIKPANILLDQCLEPKIGDFGLAR 317
           VA G++ L     + ++H D+   N+L+ +    K+ DFGL+R
Sbjct: 601 VALGMEHL---AKTRVVHRDLAARNVLVCENHTVKVSDFGLSR 640


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 94  RFHRLLHKLEAGNGQDGNNA 113
           R  + +  +EAG+G DGN +
Sbjct: 634 RKKKCIRYMEAGDGNDGNQS 653


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 94  RFHRLLHKLEAGNGQDGNNA 113
           R  + +  +EAG+G DGN +
Sbjct: 526 RKKKCIRYMEAGDGNDGNQS 545


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,801
Number of Sequences: 317
Number of extensions: 3911
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 361
length of database: 114,650
effective HSP length: 58
effective length of query: 303
effective length of database: 96,264
effective search space: 29167992
effective search space used: 29167992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)