Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family pr...   103   1e-22
At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family pr...   100   1e-21
At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t...    36   0.042
At2g35050.1 68415.m04300 protein kinase family protein contains ...    29   2.7  

>At4g15940.1 68417.m02420 fumarylacetoacetate hydrolase family
           protein contains Pfam domain, PF01557:
           fumarylacetoacetate hydrolase family protein
          Length = 222

 Score =  103 bits (248), Expect = 1e-22
 Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 5/181 (2%)

Query: 78  KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEVELCVV 137
           KI+C+G NY  H +E     P  P++F K +S+ +     + I   +   +  EVEL +V
Sbjct: 15  KIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLDS-LHHEVELALV 73

Query: 138 VGREASCVREEDALQHVAGYTVAQDISARDWQ-KEKNMG-QFLLGKSMDTFCPLGPCVLT 195
           +G++A  V E  A+ ++ GY VA D++AR+ Q   K  G  + + K  DTF P+   VL 
Sbjct: 74  IGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVAKGQDTFTPIS-SVLP 132

Query: 196 SDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPGGV 255
              V     L +   ++G  +Q   T  ++  +P L+  ISS+MTL  GD+ILTGTP GV
Sbjct: 133 KAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTLY-GDVILTGTPEGV 191

Query: 256 G 256
           G
Sbjct: 192 G 192


>At3g16700.1 68416.m02133 fumarylacetoacetate hydrolase family
           protein contains Pfam domain, PF01557:
           fumarylacetoacetate hydrolase family protein
          Length = 224

 Score =  100 bits (239), Expect = 1e-21
 Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 4/181 (2%)

Query: 78  KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEVELCVV 137
           KI+ +GLNY  H +E     P  P+VF K +S+ +     + I   +   +  EVEL VV
Sbjct: 15  KIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIPHPLDS-LHHEVELAVV 73

Query: 138 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGQF--LLGKSMDTFCPLGPCVLT 195
           +G++A  V E  A+ ++ GY +A D++AR+ Q           L K  DTF P+   VL 
Sbjct: 74  IGQKARDVPERLAMNYIGGYALALDMTARELQVSAMASGLPCTLAKGQDTFTPISS-VLP 132

Query: 196 SDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPGGV 255
              V     L +   ++   +Q   T  ++  +P L+  ISSVMTL  GD+ILTGTP G+
Sbjct: 133 KAMVLDPNNLELWLKVDDETRQKGWTKDMIFKVPYLISYISSVMTLFKGDVILTGTPEGI 192

Query: 256 G 256
           G
Sbjct: 193 G 193


>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
           fumarylacetoacetase (Fumarylacetoacetate hydrolase,
           Beta-diketonase, FAA)[Rattus norvegicus]
           SWISS-PROT:P25093
          Length = 421

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 125 TKKVDWEVELCVVVG---REASCVREEDALQHVAGYTVAQDISARDWQ--KEKNMGQFLL 179
           +KK+D+E+E+  VVG        +   +A  H+ G  +  D SARD Q  +   +G F L
Sbjct: 198 SKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDWSARDIQAWEYVPLGPF-L 256

Query: 180 GKSMDTFCPLGPCVLTSD 197
           GKS  T   + P ++T D
Sbjct: 257 GKSFGT--TISPWIVTLD 272


>At2g35050.1 68415.m04300 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1257

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 22  GDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPATI 62
           G  ++D   ADS + +  LQ+++N DLE++K+L S    T+
Sbjct: 950 GVPLIDFMAADSGMRS--LQVIKNDDLEELKELGSGTFGTV 988


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,166,365
Number of Sequences: 28952
Number of extensions: 309334
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 12,070,560
effective HSP length: 80
effective length of query: 208
effective length of database: 9,754,400
effective search space: 2028915200
effective search space used: 2028915200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)