GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.49 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    25   0.65 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 11  SPKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPATIPLS 65
           S K  R  Y   DD+++  K   +  TTL       +L KVK +  T P    LS
Sbjct: 235 SKKKTRYYYRSVDDVIEKGKRPGAFRTTL-----GSELSKVKVIDMTGPQQRVLS 284



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 92  EQNLTPPPVPMVFSKFSSTI 111
           E N  PPP P     F+ T+
Sbjct: 727 ENNAPPPPPPPRVESFAETV 746


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
          protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 43 LRNGDLEKVKKLKSTKPATIPLSSV 67
          + NG L+KV  LK T PA   L S+
Sbjct: 75 ITNGGLQKVAALKKTNPALKALFSL 99


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 16  RVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPATIPLSSVTLTAPIH 74
           +V  L   +++ ++ A +SLPT  L++  N    +   L     + +P+ + +LT   H
Sbjct: 459 QVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRH 517


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 67  VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 104
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 166 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 208


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 67  VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 104
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 441


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 67  VTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP-----PVPMVF 104
           + L+ P+     I   G+ Y+D C      PP     P P++F
Sbjct: 399 INLSVPVLLSGLIAMCGMYYRDECSFAESIPPYLFFVPPPLMF 441


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,407
Number of Sequences: 317
Number of extensions: 2933
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 114,650
effective HSP length: 56
effective length of query: 232
effective length of database: 96,898
effective search space: 22480336
effective search space used: 22480336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)