GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...   100   5e-22
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    29   1.0  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    27   2.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   4.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.4  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   7.2  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   9.5  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 19/221 (8%)

Query: 78  KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQP-VRIRTDVTKKVDWEVELCV 136
           K++CIG NY  H +E N   P  P  F K +S I+ P    + I  DV+    +EVEL +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVS--AHYEVELGL 64

Query: 137 VVGREASCVREEDA---LQHVAGYTVAQDISARDWQKE-KNMG-QFLLGKSMDTFCPLGP 191
           ++       R   +   L  +  Y V  D++AR+ Q E K  G  +   K  DTF P+GP
Sbjct: 65  IMKDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGP 124

Query: 192 CV---LTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLIL 248
            +   L  D     +EL    SLNG + Q  ST+ +++ IP +   I+  M+L PGDL+L
Sbjct: 125 IIPKHLIPDPHNVILEL----SLNGKVVQKDSTSLMLNKIPKIFSSITEAMSLNPGDLVL 180

Query: 249 TGTPGGVGMYRQPPEYLQPGDVLTSEIEKI--GAFDVRIEK 287
           TGTP GVG     P  +    +LT++ ++I    F+++ EK
Sbjct: 181 TGTPKGVGPV--VPGDILSARLLTAQEQEIIPSKFEIKAEK 219


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 193 VLTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLH 233
           VL+ DE G     +V  S + V K++ S   + HS+PS++H
Sbjct: 40  VLSDDEDGTIENSKVPASKSKVQKRNESE-DISHSLPSIVH 79


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 20  LEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPA 60
           L+GD +  + K D  +P++L + +RN ++     ++  KP+
Sbjct: 198 LKGDVLAHVGKIDKGVPSSLQKFVRNLEVLDFSGVEPKKPS 238


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 203  VELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVP 243
            V++R     +  LK+  S  Q + SIP+ L RIS+ +T  P
Sbjct: 1120 VDIRDIIDWDYYLKRLGSVVQKLISIPAALQRISNPVTRFP 1160


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 4   VQFSYKDSPKNIRVGYLEGDDIVDINKA---DSSLPTTLL--QILRNGDLEKVKKLKSTK 58
           VQ S   S   ++   L   ++V +N     D+  P+  L  +I+ N   +  K ++S  
Sbjct: 298 VQTSVSQSSAVLKSINLAKQELVSVNHLVADDTKTPSPNLSSEIIENTKADIKKSIRSLN 357

Query: 59  PATIPLSSVTLTAPIHGVDKILCIGLNYK 87
            A  P +S+ +       D+ +C  L+Y+
Sbjct: 358 KAVSPENSIDIEDETDRDDEFICFLLSYQ 386


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 55  KSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHC 90
           K   P + PL S+T   P H  DK   + +N ++ C
Sbjct: 185 KMPSPNSQPLQSITPNYPTHREDKFDLLIINIEEAC 220


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 230 SLLHRISSVMT-LVPGDLILTGTPGGVGMYRQPPEYLQPG 268
           SLL  I+ +++ L+P ++     P G G+Y+ P     PG
Sbjct: 221 SLLEPIAKMLSSLLPSNITAILYPDGRGLYQNPDGTFSPG 260


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 201 AAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPGGVGMYRQ 260
           A   ++  C +  ++   +  AQ    I  LLH I+    L     ILT TP  +  ++ 
Sbjct: 145 AGKPVQSGCQVLFIVPNDNLAAQYQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQN 204

Query: 261 PPEYL 265
            P Y+
Sbjct: 205 RPPYI 209


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 39  LLQILRNGDLEKVKKLKSTKPATIPLSSVTLTAPIHGVDKILC---IGLNYKDHCQEQNL 95
           +L  +R+ + + +  +   +   + L+       + G  K+L    +  ++  HC+E+  
Sbjct: 766 ILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGY 825

Query: 96  TPPPVPMVFSKFSSTIIGPDQPVRIRTDV 124
                     KFS T+  P +P + + D+
Sbjct: 826 LVEGTLNSLQKFSLTLTPPQKPQKFKRDL 854


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 136 VVVGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGQFLLGKSMDTFCPLGPCVLT 195
           ++  +  +CV   D  + +AG   A DI+ R      N  Q L+   M T     P  +T
Sbjct: 88  LMAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAGLNARQTLIADIMST----SPLCIT 143

Query: 196 SD 197
           SD
Sbjct: 144 SD 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,295
Number of Sequences: 5004
Number of extensions: 56897
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 10
length of query: 288
length of database: 2,362,478
effective HSP length: 72
effective length of query: 216
effective length of database: 2,002,190
effective search space: 432473040
effective search space used: 432473040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)