Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0540 - 34603979-34604094,34604173-34604290,34604394-346044... 112 4e-25
03_04_0111 + 17364496-17364612,17364741-17364915,17365847-173658... 109 3e-24
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 39 0.005
01_05_0608 - 23628100-23631486 31 1.4
06_03_1308 - 29221583-29221630,29221709-29221786,29221908-292219... 30 1.9
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 29 5.7
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 5.7
04_03_0254 - 13546324-13546814,13547211-13547279,13547542-135476... 29 5.7
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 28 7.6
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160... 28 7.6
>03_06_0540 -
34603979-34604094,34604173-34604290,34604394-34604444,
34604829-34604891,34605312-34605364,34606084-34606258,
34606375-34606479
Length = 226
Score = 112 bits (269), Expect = 4e-25
Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 10/214 (4%)
Query: 78 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTII--GPDQPVRIRTDVTKKVDWEVELC 135
KI+ +G N+ H +E P P++F K +S+ + G + + + EVEL
Sbjct: 14 KIVGVGRNFVAHAKELGNPVPKEPVLFLKPTSSFLHAGVAGAAIEVPEPVESLHHEVELA 73
Query: 136 VVVGREASCVREEDALQHVAGYTVAQDISARDWQKE-KNMG-QFLLGKSMDTFCPLGPCV 193
VV+ + A V E A+ V GY +A D++AR+ Q K+ G + LGK+ DTF P+ +
Sbjct: 74 VVISQRARDVPEASAMDFVGGYALALDMTARELQSAAKSAGLPWTLGKAQDTFTPISAVI 133
Query: 194 LTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPG 253
SD V +L + ++ L+Q ST+ ++ IPSL+ ISS+MTL+ GD+ILTGTP
Sbjct: 134 PKSD-VANPDDLELWLKVDDELRQKGSTSDMIFKIPSLISYISSIMTLMEGDVILTGTPE 192
Query: 254 GVGMYRQPPEYLQPGDVLTSEIEKIGAFDVRIEK 287
GVG R P + ++ G ++E FDV+ K
Sbjct: 193 GVGPVR-PGQKIKAGITGLIDVE----FDVQKRK 221
>03_04_0111 +
17364496-17364612,17364741-17364915,17365847-17365899,
17372593-17372655,17372794-17372844,17372949-17373066,
17373145-17373260
Length = 230
Score = 109 bits (261), Expect = 3e-24
Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 12/215 (5%)
Query: 78 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPD---QPVRIRTDVTKKVDWEVEL 134
KI+ +G NY H +E P P++F K +S+ + + + V + + EVEL
Sbjct: 18 KIIGVGRNYVAHAKELGNPVPKEPLLFLKPTSSFLHAGVAGAAIEVPGPV-ESLHHEVEL 76
Query: 135 CVVVGREASCVREEDALQHVAGYTVAQDISARDWQKE-KNMG-QFLLGKSMDTFCPLGPC 192
VV+ + A V E A+ V GY +A D++AR++Q K+ G + L K+ DTF P+
Sbjct: 77 AVVLSQRARDVPEASAMDFVGGYALALDMTAREFQSAAKSAGLPWTLCKAQDTFTPIS-A 135
Query: 193 VLTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTP 252
V+ V +L + ++ L+Q ST+ ++ IPSL+ ISS+MTL+ GD+ILTGTP
Sbjct: 136 VIPKSAVANPNDLELWLKVDDELRQKGSTSDMIFKIPSLISYISSIMTLMEGDVILTGTP 195
Query: 253 GGVGMYRQPPEYLQPGDVLTSEIEKIGAFDVRIEK 287
GVG R P + ++ G ++E FDV+ K
Sbjct: 196 EGVGPVR-PGQKIKAGITGLVDVE----FDVQKRK 225
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 125 TKKVDWEVELCVVVG---REASCVREEDALQHVAGYTVAQDISARDWQKEKN--MGQFLL 179
+KK+D+E+E+ +VG + DA +H+ G + D SARD Q + +G F L
Sbjct: 206 SKKLDFELEMAAIVGPGNELGKPIDINDAEEHIFGLMIMNDWSARDIQAWETIPLGPF-L 264
Query: 180 GKSMDTFCPLGPCVLTSD 197
GKS T + P ++T D
Sbjct: 265 GKSFST--TVSPWIVTMD 280
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 178 LLGKSMDTFCPLGPCVLTSDEVGAAV----ELRVSCSLNGVLKQSSSTAQLVHSIPSLLH 233
L K+++ C L ++ + + A + E CSLN + + + + + P+ +H
Sbjct: 322 LFPKTLENMCNLQVLLMDGNNIDADLREFMERLPMCSLNSLEELNLEYTNMSGTFPTFIH 381
Query: 234 RISSV-MTLVPGDLILTGTPGGVG 256
++S++ + L+ G+ ++ P GVG
Sbjct: 382 KMSNLSVLLLFGNKLVGELPAGVG 405
>06_03_1308 -
29221583-29221630,29221709-29221786,29221908-29221952,
29222075-29222187,29222283-29222406
Length = 135
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 96 TPPPVPMVFSKFSSTIIGPD--QPVRIRTDVTKKVDWEVELCVVVGREASCVREEDALQH 153
TPPP P FS T+ G D Q VRI+ + K CV A+C+R + +
Sbjct: 25 TPPPQPETFSNIPQTLSGGDGKQQVRIKRPKSAKALQCTSKCV-----ATCIRGGEGPLN 79
Query: 154 VAG 156
+G
Sbjct: 80 ASG 82
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 229 PSLLHRISSVMTLVPGDLILTGT---PGGVGMYRQPPEYLQPGDVLTSEIEKIGAFD 282
P LL + S T++ G GT PG V + + + QPG V I+ IG+FD
Sbjct: 681 PGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNH-QPGAVGAVRIDNIGSFD 736
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 229 PSLLHRISSVMTLVPGDLILTGT---PGGVGMYRQPPEYLQPGDVLTSEIEKIGAFD 282
P LL + S T++ G GT PG V + + + QPG V I+ IG+FD
Sbjct: 738 PGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNH-QPGAVGAVRIDNIGSFD 793
>04_03_0254 -
13546324-13546814,13547211-13547279,13547542-13547657,
13547835-13547910,13549752-13550274
Length = 424
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 166 RDWQKEKNMGQFLLGKSMDTFCPLGPCVLTSDEVGAAVELRVSCSLNGVLKQSSSTAQLV 225
R W++ N+ G ++D GP L + GAAV LRV+ + + SSS LV
Sbjct: 115 RAWRERANVDVVGEGYAVDR---AGPSALAAALHGAAVLLRVAADWDWFVTLSSSDYPLV 171
Query: 226 HSIPSLLHRISSV 238
+ LL+ SSV
Sbjct: 172 -TQDDLLYAFSSV 183
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 87 KDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEV 132
+D CQ LT P + F+ S T+ GP + V + V +VD +V
Sbjct: 149 RDDCQ--TLTSPQASITFNDSSLTLTGPSRAVVLINPVMFEVDLKV 192
>03_01_0202 +
1605703-1606402,1606681-1606824,1606911-1607063,
1607236-1607351,1607737-1607904,1607990-1608214,
1608711-1608833
Length = 542
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 12 PKNIRVGYLEGDDIVDINKADSSLP 36
P+ VGY++GD +D+ K D + P
Sbjct: 19 PREHAVGYVQGDSYLDLKKFDDTWP 43
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,648
Number of Sequences: 37544
Number of extensions: 385870
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 11
length of query: 288
length of database: 14,793,348
effective HSP length: 81
effective length of query: 207
effective length of database: 11,752,284
effective search space: 2432722788
effective search space used: 2432722788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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