GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)         80   2e-15
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   2e-13
SB_48799| Best HMM Match : FAA_hydrolase (HMM E-Value=2.6)             60   2e-09
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    36   0.039
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                33   0.21 
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              31   1.4  
SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)                 29   4.4  
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)                  28   7.7  
SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)           28   7.7  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.7  

>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
          Length = 223

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 147 EEDALQHVAGYTVAQDISARDWQKEKNMGQFLLGKSMDTFCPLGPCVLTSDEV 199
           EEDA+ +VAGYTVA D+SARDWQ +KN GQ+LLGK+ D + PLGP ++T D +
Sbjct: 169 EEDAMDYVAGYTVAHDVSARDWQLKKNAGQWLLGKTGDAYLPLGPAIVTKDAI 221



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 65  SSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDV 124
           S++ L API+  +KI+C G+NY DHC EQN+  P  P++FSKF+S I  P  P+   T+ 
Sbjct: 16  SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIPTEPVIFSKFASAIAAPGDPIPYGTET 75

Query: 125 TKKVD 129
               D
Sbjct: 76  EVSCD 80


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 28/158 (17%)

Query: 131  EVELCVVVGREASCVREEDALQHVAGYTVAQDISARDWQKE-KNMGQFLLGKSMDTFCPL 189
            EVEL VV+G++ + + EE A+ HV GY +A D++ R  Q+E K  G              
Sbjct: 882  EVELGVVIGQKGANINEEAAMDHVGGYALALDMTDRTLQEELKKKGH------------- 928

Query: 190  GPCVLTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILT 249
             P  +          L++   ++GV KQ   T+ ++ ++P L+  IS +MTL  GDLILT
Sbjct: 929  -PWAINPHN------LKLWLKVDGVTKQEGVTSDMMFTVPFLISYISKIMTLEEGDLILT 981

Query: 250  GTPGGVGMYRQPPEYLQPGDVLTSEIEKIGAFDVRIEK 287
            GTP GV   ++       GD +T+ IE I      +EK
Sbjct: 982  GTPAGVSAVKE-------GDNITAGIEGIVEMAFSVEK 1012


>SB_48799| Best HMM Match : FAA_hydrolase (HMM E-Value=2.6)
          Length = 77

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/63 (39%), Positives = 43/63 (68%)

Query: 217 QSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPGGVGMYRQPPEYLQPGDVLTSEIE 276
           Q+ +T  ++  + +L+  +S  +TL PGD++ TGTP GVG  ++P  +L+ GDV+T  I+
Sbjct: 2   QTGNTRTMIFDVKTLVSYVSEFITLEPGDILTTGTPPGVGEGKKPQVFLKAGDVMTLGIQ 61

Query: 277 KIG 279
           K+G
Sbjct: 62  KLG 64


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 56  STKPATIPLSSVTLTAPIHGVDKILC----IGLNYKDHCQEQNLTPP-PVPMVFSKFSST 110
           S K    P SSVT T P  G   +L      G + K+   E+  +PP P  +V   +S  
Sbjct: 68  SKKSGLAPASSVTATTPAPGKATVLSPSPYYGADLKEATSEEKPSPPTPGTLVAEPYSWK 127

Query: 111 IIGPDQPV-RIRTDVTKKVDWEVELCVVVGR 140
            +   QPV RIRT  TK       LC+  GR
Sbjct: 128 SLVTGQPVLRIRTTGTK----AAVLCLPAGR 154


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 97  PPPVPMVFSKFSSTIIGPDQPVRIRTDVT--KKVDWEVELCVVVGREASCVREEDALQHV 154
           PP +P   +     + GP  P      +T  ++ +WE     V G E    ++E  +  V
Sbjct: 139 PPIIPQAINSMPMPMAGPSVPTVPVPTITPAEQKEWESAYSHVEGDEKEKKKKEKKIVRV 198

Query: 155 AGYTVAQDISARDW 168
           AG  V +D S   W
Sbjct: 199 AGGQVWEDASLAQW 212


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 49  EKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFS 108
           ++ +   +T+P++    S+ LT  + G D  +  G N++  C E N   P    + S  +
Sbjct: 521 QRARYTSTTRPSSASSKSLLLTTLLLGGDIQINPGPNWRHPCGECN--KPKTKCIASWLT 578

Query: 109 STIIGPDQPVRIRTDVTKKVDWEVELCV 136
           + + G  +PV  +  +T+ +   ++ C+
Sbjct: 579 ALVFGYARPVASQAFLTRYLKKSLDCCL 606


>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/64 (29%), Positives = 28/64 (43%)

Query: 36  PTTLLQILRNGDLEKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 95
           PTT L +L    L+  K+ +  K   +PL   + T P      +L +GL+       Q  
Sbjct: 428 PTTSLDLLGQEFLQNQKQQQKHKQVVLPLPPASATPPPSSDGALLDLGLDPVPSAPTQAP 487

Query: 96  TPPP 99
           TP P
Sbjct: 488 TPTP 491


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/71 (25%), Positives = 32/71 (45%)

Query: 89  HCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEVELCVVVGREASCVREE 148
           H Q++N+   P P+ + K +  + G D P+  R        + V++        S  RE 
Sbjct: 364 HNQKKNMAERPSPISYGKKARKLSGDDGPIPKRVKQINTPVYPVDIIKTEDDIKSIEREM 423

Query: 149 DALQHVAGYTV 159
           +AL++  G  V
Sbjct: 424 EALENTIGKPV 434


>SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)
          Length = 281

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 62 IPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 95
          +PL  +    P+  +DK+ C+ + YK+ C  Q+L
Sbjct: 4  VPLQKIVENRPL--LDKLRCLDIEYKEKCNWQHL 35


>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 161 QDISARDWQKEKNMGQFLLGKSMDTFCPLGPCVLTSDEVGAAVELRVSCSLNGVLKQSSS 220
           ++I  R+ ++++++G   L +S+  +  +G C  +  E    +E RV C ++   K S+S
Sbjct: 468 REIRRRELERQESLG---LWRSLHVYI-IGRCGSSEAEKLCYIETRVECLMDMGHKCSTS 523

Query: 221 TAQLVHSIPSLLH 233
           T + V+ I    H
Sbjct: 524 TGREVNDIMRFFH 536


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 124  VTKKVDWEVELCVVVGREASCVREEDALQHVAGYTVAQDISARDWQKEKNMGQFLLGKSM 183
            VT+ V+    + +V G +A  ++E+  L+   G    Q I A DW+      + +LG+S 
Sbjct: 1884 VTEAVENGDAVALVHGVQAR-LKEQQCLREEIGEL--QKIYAMDWEPGAKRLRVMLGRSG 1940

Query: 184  DTFCPLG 190
             T C LG
Sbjct: 1941 KTVCTLG 1947


>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
          Length = 788

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 194 LTSDEVGAAVELRVSCSL-NGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTP 252
           +T+ + G+ V   VS S  N V   + +T +LV SI      ISSV+      LI++  P
Sbjct: 344 MTASDDGSLV---VSASSDNSVNLWNVATGRLVRSIEKAGENISSVLVAKDNTLIVSTCP 400

Query: 253 GGVGMYR 259
           G V  +R
Sbjct: 401 GCVSAWR 407


>SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)
          Length = 418

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 189 LGPCVLTSDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSV 238
           LGP  LT D+V     L +   + G   Q S   QL   I +L+H    +
Sbjct: 100 LGPGGLTHDKVSLISGLELRAIVFGTFMQDSQIQQLQKGIGTLVHNADKI 149


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 24  DIVDINKADSSLPTTLLQILRNGD-LEKVKKLKSTKP 59
           D+ D+N++ +++  + LQIL N   L KV  LK T P
Sbjct: 248 DVSDVNESPTAISISSLQILENRPALTKVGDLKVTDP 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,855
Number of Sequences: 59808
Number of extensions: 427019
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 18
length of query: 288
length of database: 16,821,457
effective HSP length: 81
effective length of query: 207
effective length of database: 11,977,009
effective search space: 2479240863
effective search space used: 2479240863
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)