GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    25   3.3  

>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 48  LEKVKKLKSTKPATIPLSSVTLTAPIHG-VDKILCIGLNYKDHCQEQNLTPPPVPMVFSK 106
           LE +++   T PA    S        H  +++ + +    KDH ++Q     P+     +
Sbjct: 38  LEVLEQENGTAPADWSASCTQRRTEDHAKIEQAVAV---IKDHLEKQAAATKPIRDELRR 94

Query: 107 FSSTIIGPDQPVRIRTDVTKKVDWEVELCVVVGR-EASCVREE-DALQHVAGYTVAQDIS 164
           F  T++      +++TD   ++D E+ + V+V   EA  + E       +AG+     I 
Sbjct: 95  FGGTLLPLLNSAQVKTDAA-ELD-ELRMSVLVAAIEAGRIPEAMTQFLMLAGWNRWPQIV 152

Query: 165 ARDWQKEKNMGQFL 178
           A+ +Q  +   Q +
Sbjct: 153 AQIYQNTRRDRQHI 166


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,190
Number of Sequences: 2123
Number of extensions: 12445
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 1
length of query: 288
length of database: 516,269
effective HSP length: 63
effective length of query: 225
effective length of database: 382,520
effective search space: 86067000
effective search space used: 86067000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)