GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000062-TA|BGIBMGA000062-PA|IPR002529|Fumarylacetoacetate
(FAA) hydrolase
         (288 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...   124   6e-29
Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical p...    29   5.0  
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical ...    29   5.0  
AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   8.8  

>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score =  124 bits (300), Expect = 6e-29
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 78  KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDVTKKVDWEVELCVV 137
           KI+C+G NYKDH  E     P  PM+F K  ++ I   +P+ +     + +  EVEL VV
Sbjct: 13  KIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPI-VAPPGCQNLHQEVELGVV 71

Query: 138 VGREASCVREEDALQHVAGYTVAQDISARDWQKE-KNMG-QFLLGKSMDTFCPLGPCVLT 195
           + ++AS + + DA+ ++ GYTVA D++ARD+Q E K  G  + L KS D  CP+G  +  
Sbjct: 72  ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPV 131

Query: 196 SDEVGAAVELRVSCSLNGVLKQSSSTAQLVHSIPSLLHRISSVMTLVPGDLILTGTPGGV 255
           SD +    ++ + C +NG  +Q   T  ++  IP+LL   +   TL  GD++LTGTP GV
Sbjct: 132 SD-IPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGV 190


>Z68752-11|CAM82780.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 85  NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 139
           N K+    +  T PP   + S  ++  I PDQ  P+ + T+ T    K + E +  ++ G
Sbjct: 44  NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 103

Query: 140 REASCVREEDALQHVAGYTV 159
           +E +   + D +Q      V
Sbjct: 104 KEETPPAKTDVIQEATTVVV 123


>Z68752-10|CAA92986.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 85  NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 139
           N K+    +  T PP   + S  ++  I PDQ  P+ + T+ T    K + E +  ++ G
Sbjct: 74  NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 133

Query: 140 REASCVREEDALQHVAGYTV 159
           +E +   + D +Q      V
Sbjct: 134 KEETPPAKTDVIQEATTVVV 153


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 138 VGREASCVREEDALQHVAGYTVAQDISARDWQKEKN 173
           VG       ++++L++V G+ V Q +++  W +EKN
Sbjct: 198 VGNIDQLRHDDNSLRNVGGHRVRQRVASVSWNREKN 233


>AL023840-2|CAM82781.1|  324|Caenorhabditis elegans Hypothetical
           protein T12G3.7b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 85  NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 139
           N K+    +  T PP   + S  ++  I PDQ  P+ + T+ T    K + E +  ++ G
Sbjct: 44  NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 103

Query: 140 REASCVREEDALQHVAGYTV 159
           +E +   + D +Q      V
Sbjct: 104 KEETPPAKTDVIQEATTVVV 123


>AL023840-1|CAA19510.1|  354|Caenorhabditis elegans Hypothetical
           protein T12G3.7a protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 85  NYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQ--PVRIRTDVT---KKVDWEVELCVVVG 139
           N K+    +  T PP   + S  ++  I PDQ  P+ + T+ T    K + E +  ++ G
Sbjct: 74  NEKEGKSSEKSTTPPTLTLLSSTANLTIAPDQVAPIPVATNATIIESKTENEKKEELLTG 133

Query: 140 REASCVREEDALQHVAGYTV 159
           +E +   + D +Q      V
Sbjct: 134 KEETPPAKTDVIQEATTVVV 153


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 45  NGDLEKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVP 101
           N  +    K++  +PA  P  +      +    + L  G+ YKD CQ     PPP P
Sbjct: 337 NSIVPDAPKVEEPEPAPTPAPAPAEDPVVTPAPEELT-GVCYKDDCQGLQTPPPPAP 392


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,471,082
Number of Sequences: 27539
Number of extensions: 327843
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 12,573,161
effective HSP length: 81
effective length of query: 207
effective length of database: 10,342,502
effective search space: 2140897914
effective search space used: 2140897914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)