Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   9.9  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
          protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 53 LLANKQILDILMKIDFTPTRSVIKFS 78
          LLA   I+ +L   D TP R V  FS
Sbjct: 4  LLAVATIITLLQPYDATPARIVCYFS 29


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 126 QHVFCNSTQNTLLDKM 141
           QH F N   ++LLDKM
Sbjct: 611 QHEFKNGDSSSLLDKM 626


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 125 RQHVFCNSTQNTLLDKMV 142
           R+  +C +T+N   DKM+
Sbjct: 306 REFFYCAATKNPNFDKMI 323


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 143 TKYWKRPKHYVEDPYAPYHTREEFHFTR 170
           TK W  P       +  +HT E F +TR
Sbjct: 107 TKAWFLPFVVTNIIFVLFHTYEAFVWTR 134


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,722
Number of Sequences: 317
Number of extensions: 1648
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 114,650
effective HSP length: 53
effective length of query: 123
effective length of database: 97,849
effective search space: 12035427
effective search space used: 12035427
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)