Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           28   4.9  
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)               27   6.5  
SB_50494| Best HMM Match : PSD3 (HMM E-Value=6.1)                      27   8.6  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      27   8.6  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        27   8.6  

>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 113 LWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKH 151
           L +KS A KR L+ H++ +ST+     ++  K +KR  H
Sbjct: 284 LCEKSFAKKRSLKSHMYSHSTEKAFKCEVCGKCFKRDSH 322


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 112 KLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVED 155
           KLW+          +HVF  +    L +  + ++WK  K+  ED
Sbjct: 385 KLWRDKVGKAIASAKHVFYRTKVKNLKNTNIGRWWKEVKNLSED 428


>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
          Length = 1275

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 141  MVTKYWKRPKHYVEDPYAPYHTREEFHFTRKQPIQ 175
            +   Y   P  Y+ DPY   H     H  + QPI+
Sbjct: 1235 LAVAYKPGPTMYLSDPYPSPHYHSTMHVQKHQPIR 1269


>SB_50494| Best HMM Match : PSD3 (HMM E-Value=6.1)
          Length = 158

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 99  WGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLD 139
           WGG+   K+G  K+  KK   N R     + C+  Q TL++
Sbjct: 43  WGGFFERKVGPVKRCLKKVLGNAR-----LNCDEMQTTLVE 78


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 18   SPLHN-AITLTTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIK 76
            +PLH  A + TTK +  ++   + +I P   L   + LA+   +  +  + FTP +S ++
Sbjct: 1313 NPLHQIASSRTTKPLHQYNLRADRKIVPA--LCNTNRLADFVTVKFVEFLQFTPHKSSLR 1370

Query: 77   FSLKKGKRKTVKAVIKR 93
                   R+  +A I+R
Sbjct: 1371 KQTPLAAREITRAAIRR 1387


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 99  WGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLD 139
           WGG+   K+G  K+  KK   N R     + C+  Q TL++
Sbjct: 322 WGGFFERKVGPVKRCLKKVLGNAR-----LNCDEMQTTLVE 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,873,163
Number of Sequences: 59808
Number of extensions: 222967
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 16,821,457
effective HSP length: 78
effective length of query: 98
effective length of database: 12,156,433
effective search space: 1191330434
effective search space used: 1191330434
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)