BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein L35 (176 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY119133-1|AAM50993.1| 178|Drosophila melanogaster RE35766p pro... 161 5e-40 AE014297-3081|AAF55944.2| 178|Drosophila melanogaster CG13410-P... 161 5e-40 AF160947-1|AAD46887.1| 844|Drosophila melanogaster LD24485p pro... 31 0.66 AF073179-1|AAD27760.1| 844|Drosophila melanogaster glycogen pho... 31 0.66 AF073178-1|AAD27759.1| 844|Drosophila melanogaster glycogen pho... 31 0.66 AF073177-1|AAD41649.1| 844|Drosophila melanogaster glycogen pho... 31 0.66 AE014134-341|AAZ66442.1| 844|Drosophila melanogaster CG7254-PB,... 31 0.66 AE014134-340|AAF51303.1| 844|Drosophila melanogaster CG7254-PA,... 31 0.66 BT012499-1|AAS93770.1| 347|Drosophila melanogaster GH09281p pro... 28 6.2 AY089219-1|AAL89957.1| 340|Drosophila melanogaster AT01837p pro... 28 6.2 AE014134-190|AAF51428.2| 347|Drosophila melanogaster CG4415-PA ... 28 6.2 >AY119133-1|AAM50993.1| 178|Drosophila melanogaster RE35766p protein. Length = 178 Score = 161 bits (391), Expect = 5e-40 Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 6/132 (4%) Query: 47 LLPQNSLL--ANKQILDI--LMKIDFTP--TRSVIKFSLKKGKRKTVKAVIKRFFRLHWG 100 LLP SL A+ Q+L + ++ TP TR+V KFSL KGKRKTVKAV+KRF RL WG Sbjct: 43 LLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLDWG 102 Query: 101 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPY 160 WIRT GR KKL+KKS+A +RRL+QHVF N+TQ+ LLDKMVT YW+RPKH++ DPY PY Sbjct: 103 AWIRTHSGRQKKLFKKSAALRRRLKQHVFTNATQSWLLDKMVTSYWRRPKHFINDPYKPY 162 Query: 161 HTREEFHFTRKQ 172 H+R E++ T+ + Sbjct: 163 HSRNEYYATQSK 174 >AE014297-3081|AAF55944.2| 178|Drosophila melanogaster CG13410-PA protein. Length = 178 Score = 161 bits (391), Expect = 5e-40 Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 6/132 (4%) Query: 47 LLPQNSLL--ANKQILDI--LMKIDFTP--TRSVIKFSLKKGKRKTVKAVIKRFFRLHWG 100 LLP SL A+ Q+L + ++ TP TR+V KFSL KGKRKTVKAV+KRF RL WG Sbjct: 43 LLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLDWG 102 Query: 101 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPY 160 WIRT GR KKL+KKS+A +RRL+QHVF N+TQ+ LLDKMVT YW+RPKH++ DPY PY Sbjct: 103 AWIRTHSGRQKKLFKKSAALRRRLKQHVFTNATQSWLLDKMVTSYWRRPKHFINDPYKPY 162 Query: 161 HTREEFHFTRKQ 172 H+R E++ T+ + Sbjct: 163 HSRNEYYATQSK 174 >AF160947-1|AAD46887.1| 844|Drosophila melanogaster LD24485p protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >AF073179-1|AAD27760.1| 844|Drosophila melanogaster glycogen phosphorylase protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >AF073178-1|AAD27759.1| 844|Drosophila melanogaster glycogen phosphorylase protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >AF073177-1|AAD41649.1| 844|Drosophila melanogaster glycogen phosphorylase protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >AE014134-341|AAZ66442.1| 844|Drosophila melanogaster CG7254-PB, isoform B protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >AE014134-340|AAF51303.1| 844|Drosophila melanogaster CG7254-PA, isoform A protein. Length = 844 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161 ++ RH N LR + F + NT+ D MV ++ + +HY E DP Y+ Sbjct: 28 VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85 Query: 162 TREEFHFTR 170 E++ R Sbjct: 86 LSLEYYMGR 94 >BT012499-1|AAS93770.1| 347|Drosophila melanogaster GH09281p protein. Length = 347 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 62 ILMKIDFTPTRSVIKFSLKKGK 83 ILMK+D P +V + ++KKGK Sbjct: 198 ILMKLDLKPMENVARVTMKKGK 219 >AY089219-1|AAL89957.1| 340|Drosophila melanogaster AT01837p protein. Length = 340 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 62 ILMKIDFTPTRSVIKFSLKKGK 83 ILMK+D P +V + ++KKGK Sbjct: 191 ILMKLDLKPMENVARVTMKKGK 212 >AE014134-190|AAF51428.2| 347|Drosophila melanogaster CG4415-PA protein. Length = 347 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 62 ILMKIDFTPTRSVIKFSLKKGK 83 ILMK+D P +V + ++KKGK Sbjct: 198 ILMKLDLKPMENVARVTMKKGK 219 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.325 0.136 0.422 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,239,894 Number of Sequences: 52641 Number of extensions: 305042 Number of successful extensions: 863 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 858 Number of HSP's gapped (non-prelim): 11 length of query: 176 length of database: 24,830,863 effective HSP length: 80 effective length of query: 96 effective length of database: 20,619,583 effective search space: 1979479968 effective search space used: 1979479968 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 59 (27.9 bits)
- SilkBase 1999-2023 -