BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein L35 (176 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z46381-9|CAA86518.2| 158|Caenorhabditis elegans Hypothetical pr... 79 2e-15 Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 30 1.1 Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 30 1.1 Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr... 28 4.3 U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical pr... 27 7.4 U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical pr... 27 7.4 >Z46381-9|CAA86518.2| 158|Caenorhabditis elegans Hypothetical protein M01F1.6 protein. Length = 158 Score = 78.6 bits (185), Expect = 2e-15 Identities = 35/89 (39%), Positives = 51/89 (57%) Query: 75 IKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQ 134 I+F K G+++ + V+ RF RL+ G WI GRHK + K ++ + C Q Sbjct: 35 IRFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQ 94 Query: 135 NTLLDKMVTKYWKRPKHYVEDPYAPYHTR 163 +LDK++T YW RPKHY DPY+ Y+ R Sbjct: 95 CEILDKLMTPYWLRPKHYPNDPYSAYNVR 123 >Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical protein T05H10.6b protein. Length = 414 Score = 29.9 bits (64), Expect = 1.1 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 129 FCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 171 +C+S + L+ +M T ++ H + DP Y TREE RK Sbjct: 283 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 323 >Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical protein T05H10.6a protein. Length = 397 Score = 29.9 bits (64), Expect = 1.1 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 129 FCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 171 +C+S + L+ +M T ++ H + DP Y TREE RK Sbjct: 266 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 306 >Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein C09G1.2 protein. Length = 1115 Score = 27.9 bits (59), Expect = 4.3 Identities = 12/32 (37%), Positives = 22/32 (68%) Query: 27 TTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 58 T KD++ FS KN+++QP S ++S + N++ Sbjct: 492 TEKDLKSFSIKKNVQVQPCSPSLKSSDIGNER 523 >U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical protein T22F3.3b protein. Length = 846 Score = 27.1 bits (57), Expect = 7.4 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 135 NTLLDKMVTKYWKRPKHYVE-DPYAPYHTREEFHFTR 170 NT+ D +V+++ + +HY + DP Y+ EF+ R Sbjct: 56 NTVRDHLVSRWIRTQQHYYDKDPKRVYYLSLEFYMGR 92 >U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical protein T22F3.3a protein. Length = 882 Score = 27.1 bits (57), Expect = 7.4 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 135 NTLLDKMVTKYWKRPKHYVE-DPYAPYHTREEFHFTR 170 NT+ D +V+++ + +HY + DP Y+ EF+ R Sbjct: 92 NTVRDHLVSRWIRTQQHYYDKDPKRVYYLSLEFYMGR 128 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.325 0.136 0.422 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,250,767 Number of Sequences: 27539 Number of extensions: 161384 Number of successful extensions: 519 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 517 Number of HSP's gapped (non-prelim): 6 length of query: 176 length of database: 12,573,161 effective HSP length: 77 effective length of query: 99 effective length of database: 10,452,658 effective search space: 1034813142 effective search space used: 1034813142 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 56 (26.6 bits)
- SilkBase 1999-2023 -