Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
(176 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 34 0.014
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 29 0.29
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 4.8
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 4.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.8
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 6.3
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 25 6.3
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 25 6.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.3
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 8.4
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 33.9 bits (74), Expect = 0.014
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 132 STQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRKQPIQ 175
+T N + T Y+K+P ++ PY+ ++ +++ +QP+Q
Sbjct: 646 NTHNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNYQNQQPMQ 689
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 29.5 bits (63), Expect = 0.29
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 40 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLH 98
I +Q S L + L++ ++LD+ +K + TP ++++ L+KG KA F +H
Sbjct: 183 ILVQAFSPLTRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKA--SSFVHIH 239
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 29 KDVRHFSA--FKNIEIQPRSLLPQNSLLA 55
K++ HF++ FKNI+IQ P+ LLA
Sbjct: 93 KELDHFTSKPFKNIDIQNEQTNPKQLLLA 121
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 101 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRP 149
G I + H LW + +N R +FC ST + Y P
Sbjct: 117 GTISRLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSP 165
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 42 IQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKT--VKAVIKRFFRLH 98
+Q R + Q + ++I+ + K T +IK LK+GK+K +K +KR+ LH
Sbjct: 124 LQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIK--LKEGKQKVNLLKRSLKRYNELH 180
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 6.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 40 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIK---FSLKKGKRKTVKAVIKRFFR 96
IE+ SLL N A IL+ + F+ SVI F+L + K T I +
Sbjct: 10 IEVVINSLLNDNPAQAKFDKYSILVSLGFSSLLSVILLCIFTLLRTKFNTYDRCIPPMKK 69
Query: 97 LHWGGWI 103
W GWI
Sbjct: 70 SLW-GWI 75
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 116 KSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHF 168
++SAN +F ++ +VT WK HY ++ + EE +
Sbjct: 65 RTSANIGNFSIVIFGGGVFGLIIYALVTSIWKGEAHYGDEAFELLKANEECRY 117
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 38 KNIEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKG 82
K I++ + L NKQ+L I K + + + +I++ L++G
Sbjct: 181 KGIQLAAYAPLVHGEKFGNKQLLAIASKYNKSEAQIMIRYCLQRG 225
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 110 HKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFT 169
H + SSA K + ++ + T+ + M+ + K Y D P H + + F
Sbjct: 26 HSHVRYLSSAKKSGILRNSYNQRTERYFTNIMIPSDYSN-KFYPVDGVVPKHETQAYEFL 84
Query: 170 RKQP 173
+K P
Sbjct: 85 KKFP 88
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 34 FSAFKNIEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKR 93
F +KNIE+ P +P L I D+ + + ++ T+K V++R
Sbjct: 92 FKIWKNIELSPSRKIPPMVLHTYLDISDLSKNQTLSVSDGTHSHAINFNNMSTMKIVLER 151
Query: 94 F 94
+
Sbjct: 152 W 152
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.136 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,943
Number of Sequences: 5004
Number of extensions: 30920
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 10
length of query: 176
length of database: 2,362,478
effective HSP length: 68
effective length of query: 108
effective length of database: 2,022,206
effective search space: 218398248
effective search space used: 218398248
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)
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