GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547...    30   0.91 
06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920     30   1.2  
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668...    28   4.9  
05_04_0062 + 17607290-17608852                                         28   4.9  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    28   4.9  
02_04_0378 - 22487876-22488531,22488625-22488703,22488982-22488987     27   6.4  
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    27   8.5  
05_04_0064 - 17613070-17614749                                         27   8.5  

>07_01_0716 +
           5472618-5472818,5472943-5472985,5473672-5473761,
           5473863-5473938,5474435-5474504,5474911-5475075,
           5475261-5475404,5475547-5475651,5475876-5476022,
           5476463-5476531,5476882-5476989,5477392-5477483,
           5477559-5477598,5478129-5478221,5478386-5478958,
           5479596-5479610
          Length = 676

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 2   LRFLSTAVRYARCLPASPLHNAITLTTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 58
           L++ + +V+  +CL    + N +  T   +R+ SA K+I I     +PQ+SLL++ +
Sbjct: 300 LKYENNSVKAVKCLNEM-VTNGLIHTEDCLRYMSALKDITILRFCAIPQSSLLSSTE 355


>06_03_0932 + 26059121-26059366,26059450-26059566,26060843-26060920
          Length = 146

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 83  KRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNST 133
           K KT KA  KRF     G  +R + G+   L KK++  ++RL + +  N +
Sbjct: 77  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMIQVNKS 127


>09_03_0167 +
           12965030-12965356,12966100-12966387,12966704-12966826,
           12967229-12967611,12967863-12968190,12968324-12968353,
           12968837-12968989,12969510-12969815
          Length = 645

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 107 IGRHKKLWKKSSANKRRLRQHVFCNST 133
           IG HKK W++     RR +Q+VF  +T
Sbjct: 314 IGAHKKDWRRVRKVYRRSKQYVFVAAT 340


>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 12/50 (24%)

Query: 106 KIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVED 155
           K  RH+KLWK  +    RLRQ +     +  ++DK++T Y    K Y+ED
Sbjct: 459 KTFRHQKLWKVPNP---RLRQKL-----REAIIDKVITGY----KRYLED 496


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 85  KTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHV 128
           K +K   KR  R+H G  +  ++  H K  K S + K  L +HV
Sbjct: 421 KQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHV 464


>02_04_0378 - 22487876-22488531,22488625-22488703,22488982-22488987
          Length = 246

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 149 PKHYVEDPYAPYHTREEF 166
           P HY   PY PYH ++++
Sbjct: 113 PYHYQPSPYGPYHQQQQW 130


>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 12/46 (26%)

Query: 110 HKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVED 155
           H+KLWK    N   LRQ     S + T+++K++T+Y    K Y+ED
Sbjct: 303 HQKLWKVPLPN---LRQ-----SLRETIINKIITRY----KKYMED 336


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 106 KIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE 154
           K  RH+KLWK  +   R        NS +  + DK++T Y K  + ++E
Sbjct: 498 KACRHQKLWKVPNTEHR--------NSLRKAISDKVITAYRKYLEGHLE 538


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,806,631
Number of Sequences: 37544
Number of extensions: 173930
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 14,793,348
effective HSP length: 77
effective length of query: 99
effective length of database: 11,902,460
effective search space: 1178343540
effective search space used: 1178343540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)