GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal...   117   2e-26
U12202-2|AAB08007.1|  130|Homo sapiens ribosomal protein S24 pro...    32   1.2  
U12202-1|AAB08006.1|  133|Homo sapiens ribosomal protein S24 pro...    32   1.2  
M31520-2|AAA36588.1|  133|Homo sapiens ribosomal protein S24 pro...    32   1.2  
BX537975-1|CAD97939.1|  132|Homo sapiens hypothetical protein pr...    32   1.2  
BC071926-1|AAH71926.1|  130|Homo sapiens ribosomal protein S24 p...    32   1.2  
BC000523-1|AAH00523.1|  130|Homo sapiens ribosomal protein S24 p...    32   1.2  
AL512628-3|CAI16468.1|  133|Homo sapiens ribosomal protein S24 p...    32   1.2  
AL512628-2|CAI16467.1|  130|Homo sapiens ribosomal protein S24 p...    32   1.2  

>BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal
           protein L35 protein.
          Length = 170

 Score =  117 bits (282), Expect = 2e-26
 Identities = 64/147 (43%), Positives = 87/147 (59%), Gaps = 7/147 (4%)

Query: 7   TAVRYARCLPASPLHNAITLTTKDVRHF-----SAFKNIEIQPRSLLPQNSLLANKQILD 61
           T+  Y  C+  + L +A  L+T    H      S+   +    R+L   ++ +   ++  
Sbjct: 24  TSSTYRNCVKNASLISA--LSTGRFSHIQTPVVSSTPRLTTSERNLTCGHTSVILNRMAP 81

Query: 62  ILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANK 121
           +L  +   P RS+  FS +KGKRKTVKAVI RF RLH G W+R K G  KKLWKK+ A K
Sbjct: 82  VLPSVLKLPVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPARK 141

Query: 122 RRLRQHVFCNSTQNTLLDKMVTKYWKR 148
           +RLR+ VFCN TQ+ LLDKM T +WKR
Sbjct: 142 KRLREFVFCNKTQSKLLDKMTTSFWKR 168


>U12202-2|AAB08007.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>U12202-1|AAB08006.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>M31520-2|AAA36588.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>BX537975-1|CAD97939.1|  132|Homo sapiens hypothetical protein
           protein.
          Length = 132

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>BC071926-1|AAH71926.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>BC000523-1|AAH00523.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>AL512628-3|CAI16468.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


>AL512628-2|CAI16467.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 40  IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHW 99
           + I+ R  +    L   + ++D+L     T  ++ I+  L K  + T   +    FR H+
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHF 64

Query: 100 GGWIRTKIGR-HKKL-WKKSSANKRRLRQH 127
           GG   T  G  +  L + K +  K RL +H
Sbjct: 65  GGGKTTGFGMIYDSLDYAKKNEPKHRLARH 94


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,822,611
Number of Sequences: 224733
Number of extensions: 900114
Number of successful extensions: 3012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3011
Number of HSP's gapped (non-prelim): 9
length of query: 176
length of database: 73,234,838
effective HSP length: 85
effective length of query: 91
effective length of database: 54,132,533
effective search space: 4926060503
effective search space used: 4926060503
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)