GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119133-1|AAM50993.1|  178|Drosophila melanogaster RE35766p pro...   161   5e-40
AE014297-3081|AAF55944.2|  178|Drosophila melanogaster CG13410-P...   161   5e-40
AF160947-1|AAD46887.1|  844|Drosophila melanogaster LD24485p pro...    31   0.66 
AF073179-1|AAD27760.1|  844|Drosophila melanogaster glycogen pho...    31   0.66 
AF073178-1|AAD27759.1|  844|Drosophila melanogaster glycogen pho...    31   0.66 
AF073177-1|AAD41649.1|  844|Drosophila melanogaster glycogen pho...    31   0.66 
AE014134-341|AAZ66442.1|  844|Drosophila melanogaster CG7254-PB,...    31   0.66 
AE014134-340|AAF51303.1|  844|Drosophila melanogaster CG7254-PA,...    31   0.66 
BT012499-1|AAS93770.1|  347|Drosophila melanogaster GH09281p pro...    28   6.2  
AY089219-1|AAL89957.1|  340|Drosophila melanogaster AT01837p pro...    28   6.2  
AE014134-190|AAF51428.2|  347|Drosophila melanogaster CG4415-PA ...    28   6.2  

>AY119133-1|AAM50993.1|  178|Drosophila melanogaster RE35766p
           protein.
          Length = 178

 Score =  161 bits (391), Expect = 5e-40
 Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 6/132 (4%)

Query: 47  LLPQNSLL--ANKQILDI--LMKIDFTP--TRSVIKFSLKKGKRKTVKAVIKRFFRLHWG 100
           LLP  SL   A+ Q+L +  ++    TP  TR+V KFSL KGKRKTVKAV+KRF RL WG
Sbjct: 43  LLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLDWG 102

Query: 101 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPY 160
            WIRT  GR KKL+KKS+A +RRL+QHVF N+TQ+ LLDKMVT YW+RPKH++ DPY PY
Sbjct: 103 AWIRTHSGRQKKLFKKSAALRRRLKQHVFTNATQSWLLDKMVTSYWRRPKHFINDPYKPY 162

Query: 161 HTREEFHFTRKQ 172
           H+R E++ T+ +
Sbjct: 163 HSRNEYYATQSK 174


>AE014297-3081|AAF55944.2|  178|Drosophila melanogaster CG13410-PA
           protein.
          Length = 178

 Score =  161 bits (391), Expect = 5e-40
 Identities = 79/132 (59%), Positives = 100/132 (75%), Gaps = 6/132 (4%)

Query: 47  LLPQNSLL--ANKQILDI--LMKIDFTP--TRSVIKFSLKKGKRKTVKAVIKRFFRLHWG 100
           LLP  SL   A+ Q+L +  ++    TP  TR+V KFSL KGKRKTVKAV+KRF RL WG
Sbjct: 43  LLPTPSLASPAHHQLLQLPGVLAATGTPSNTRNVTKFSLVKGKRKTVKAVLKRFKRLDWG 102

Query: 101 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPY 160
            WIRT  GR KKL+KKS+A +RRL+QHVF N+TQ+ LLDKMVT YW+RPKH++ DPY PY
Sbjct: 103 AWIRTHSGRQKKLFKKSAALRRRLKQHVFTNATQSWLLDKMVTSYWRRPKHFINDPYKPY 162

Query: 161 HTREEFHFTRKQ 172
           H+R E++ T+ +
Sbjct: 163 HSRNEYYATQSK 174


>AF160947-1|AAD46887.1|  844|Drosophila melanogaster LD24485p
           protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>AF073179-1|AAD27760.1|  844|Drosophila melanogaster glycogen
           phosphorylase protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>AF073178-1|AAD27759.1|  844|Drosophila melanogaster glycogen
           phosphorylase protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>AF073177-1|AAD41649.1|  844|Drosophila melanogaster glycogen
           phosphorylase protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>AE014134-341|AAZ66442.1|  844|Drosophila melanogaster CG7254-PB,
           isoform B protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>AE014134-340|AAF51303.1|  844|Drosophila melanogaster CG7254-PA,
           isoform A protein.
          Length = 844

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 103 IRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 161
           ++    RH         N   LR + F  +  NT+ D MV ++ +  +HY E DP   Y+
Sbjct: 28  VKKNFNRHLHYTLVKDRNVSTLRDYYF--ALANTVKDNMVGRWIRTQQHYYEKDPKRVYY 85

Query: 162 TREEFHFTR 170
              E++  R
Sbjct: 86  LSLEYYMGR 94


>BT012499-1|AAS93770.1|  347|Drosophila melanogaster GH09281p
           protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 62  ILMKIDFTPTRSVIKFSLKKGK 83
           ILMK+D  P  +V + ++KKGK
Sbjct: 198 ILMKLDLKPMENVARVTMKKGK 219


>AY089219-1|AAL89957.1|  340|Drosophila melanogaster AT01837p
           protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 62  ILMKIDFTPTRSVIKFSLKKGK 83
           ILMK+D  P  +V + ++KKGK
Sbjct: 191 ILMKLDLKPMENVARVTMKKGK 212


>AE014134-190|AAF51428.2|  347|Drosophila melanogaster CG4415-PA
           protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 62  ILMKIDFTPTRSVIKFSLKKGK 83
           ILMK+D  P  +V + ++KKGK
Sbjct: 198 ILMKLDLKPMENVARVTMKKGK 219


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,239,894
Number of Sequences: 52641
Number of extensions: 305042
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 11
length of query: 176
length of database: 24,830,863
effective HSP length: 80
effective length of query: 96
effective length of database: 20,619,583
effective search space: 1979479968
effective search space used: 1979479968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)