GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000061-TA|BGIBMGA000061-PA|IPR001706|Ribosomal protein
L35
         (176 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-9|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z46381-9|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 75  IKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQ 134
           I+F  K G+++  + V+ RF RL+ G WI    GRHK  + K    ++    +  C   Q
Sbjct: 35  IRFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQ 94

Query: 135 NTLLDKMVTKYWKRPKHYVEDPYAPYHTR 163
             +LDK++T YW RPKHY  DPY+ Y+ R
Sbjct: 95  CEILDKLMTPYWLRPKHYPNDPYSAYNVR 123


>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 129 FCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 171
           +C+S +  L+ +M T  ++   H + DP   Y TREE    RK
Sbjct: 283 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 323


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 129 FCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 171
           +C+S +  L+ +M T  ++   H + DP   Y TREE    RK
Sbjct: 266 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 306


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 27  TTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 58
           T KD++ FS  KN+++QP S   ++S + N++
Sbjct: 492 TEKDLKSFSIKKNVQVQPCSPSLKSSDIGNER 523


>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 135 NTLLDKMVTKYWKRPKHYVE-DPYAPYHTREEFHFTR 170
           NT+ D +V+++ +  +HY + DP   Y+   EF+  R
Sbjct: 56  NTVRDHLVSRWIRTQQHYYDKDPKRVYYLSLEFYMGR 92


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 135 NTLLDKMVTKYWKRPKHYVE-DPYAPYHTREEFHFTR 170
           NT+ D +V+++ +  +HY + DP   Y+   EF+  R
Sbjct: 92  NTVRDHLVSRWIRTQQHYYDKDPKRVYYLSLEFYMGR 128


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,250,767
Number of Sequences: 27539
Number of extensions: 161384
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 12,573,161
effective HSP length: 77
effective length of query: 99
effective length of database: 10,452,658
effective search space: 1034813142
effective search space used: 1034813142
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)