GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000060-TA|BGIBMGA000060-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase, IPR001998|Xylose
isomerase, IPR003607|Metal-dependent phosphohydrolase, HD region
         (852 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   2.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   3.8  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    24   3.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    24   3.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 512 DLDHRGTNNAFQTKTESPLAILYSTSTMEHHHFDQCVMILNSESNNIFQA 561
           DL    TNN  +T T++   +  S    E +  D    + NS  +NI QA
Sbjct: 499 DLSMLETNNLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNICQA 548


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 711 WQDLAEKVDMGLTWIDHDTIDKPVEEFTALNEPLADVELTVTTLNCAAGPPAKPLKTP 768
           WQ +A  V+      D D I+KP     ++ E L  V      L+    P +K ++ P
Sbjct: 469 WQKIAGAVEED----DEDAIEKPAPVKISVQEVLNRVRKPTKKLHLKNSPISKKVRPP 522


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 318 SAGVRTLLCMPIVNANKDVIGVAQLINKFTEGD 350
           +A     LC  I N  + ++G++  + K   GD
Sbjct: 271 NASTNIFLCDEICNEGQTILGISYSLEKLKTGD 303



 Score = 23.0 bits (47), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 68  TELILCMPICNYEGDVVGVAQIINK-TDGEHTTE--STLDHNYEPR 110
           T + LC  ICN    ++G++  + K   G+   +  ST+  N+ PR
Sbjct: 274 TNIFLCDEICNEGQTILGISYSLEKLKTGDEIQDLISTIKDNF-PR 318


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 318 SAGVRTLLCMPIVNANKDVIGVAQLINKFTEGD 350
           +A     LC  I N  + ++G++  + K   GD
Sbjct: 271 NASTNIFLCDEICNEGQTILGISYSLEKLKTGD 303



 Score = 23.0 bits (47), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 68  TELILCMPICNYEGDVVGVAQIINK-TDGEHTTE--STLDHNYEPR 110
           T + LC  ICN    ++G++  + K   G+   +  ST+  N+ PR
Sbjct: 274 TNIFLCDEICNEGQTILGISYSLEKLKTGDEIQDLISTIKDNF-PR 318


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,393
Number of Sequences: 317
Number of extensions: 7398
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 852
length of database: 114,650
effective HSP length: 63
effective length of query: 789
effective length of database: 94,679
effective search space: 74701731
effective search space used: 74701731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)