Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000060-TA|BGIBMGA000060-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase, IPR001998|Xylose
isomerase, IPR003607|Metal-dependent phosphohydrolase, HD region
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 31 0.67
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.89
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ... 29 3.6
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 29 3.6
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 28 4.7
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 28 4.7
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 28 6.3
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 28 6.3
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 8.3
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 8.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 8.3
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 27 8.3
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 577 AILSTDLAMYFKKKSKFLELVDNGEFDWQAQEKKELLCGMMMTACDVSAIAKPWEVQHR 635
+ L+ DLA F K K E V + D + + ELLCG C ++ P+EV R
Sbjct: 205 SFLAYDLATDFFHKQKIDEWVSTKKSDKKLKTWPELLCGAFAGVCG-QTVSYPFEVCRR 262
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 561 ALSPRDYKDVMHVVETAILSTDLAMYFKKKSKFLELVDNGEFDWQAQEKKELLCGMMMTA 620
AL +DY+ V+H+++ + L + + +K + E+ D + + L CG + TA
Sbjct: 609 ALLRKDYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETA 668
Query: 621 CDVSAIAKPWEVQHRIA 637
+++ EV R+A
Sbjct: 669 LELARTIDRPEVWSRLA 685
>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 179
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 603 DWQAQEKKELLCGMMMTACDVSAIAKPWEVQHRIAKLVADEFFDQGDLE 651
D +K++ + G+++ V++ + W+V+ I +++ DE F+ G +E
Sbjct: 36 DVDTADKRDWMAGVLVDYITVTSDVEAWDVEELILQVLQDE-FNVGSIE 83
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 280 PHDALPAIALAVARSNKSLNISDVEQWLRDNNMSAGENSAGVRTLLCMPIVNANKDVI 337
PH+ LP + +N + + + R NN S E+ V + L P NAN+D+I
Sbjct: 11 PHEILPKEPFDLPMNNLKSSPKNKDSEKRINN-SIAESEQVVDSALSNPETNANEDII 67
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 134 LYTYLRRKLSHSGSKEFSSRDVEVFRRYLTFCGIGIQNAQLFESSVLEYKRNQILLALAR 193
+Y +L+ G++ SS V FRR GI+ +F+ KR I AR
Sbjct: 35 IYQFLKAVRDKEGNQLKSSHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQAR 94
Query: 194 SIFEEQS 200
+ E++
Sbjct: 95 RLDREEN 101
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 601 EFDWQAQEKKELLCGMMMTACDVSAIAKPWEVQHRIAKLV--ADEFFDQGD-LEKLQLNQ 657
E D + K+L + ++A+A PWEV++ + V +EF + D +E +
Sbjct: 96 EQDANPADTKDLFEEVDSKTRSMNAVAMPWEVKNMFTEPVPETEEFEEDNDTMEMAYATR 155
Query: 658 QPIAMMDREKK 668
Q + M D K
Sbjct: 156 QRLKMADERTK 166
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 632 VQHRIAKLVADEFFDQGDLEKLQLNQQPIAMMDREKKDELPQMQ 675
V +R+ K + + F +N QPIA+ +K E+PQ++
Sbjct: 13 VHYRVGKKIGEGSFGMLFQGVNLINNQPIALKFESRKSEVPQLR 56
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 119 VASHWYSLYYFGNQRLYTYLRRKLSHSGSKEFSSRDVE 156
V +H YS ++ L+ +R++L H SK F + D++
Sbjct: 72 VWAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNIDIQ 109
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 298 LNISDVEQWLRDNNMSAGENSAGVRTLLCMPIVNANKDVI 337
LN+ ++ L N AGE +C PI A +D +
Sbjct: 146 LNLDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYL 185
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 590 KSKFLELVDNGEFDWQAQEKKELLCGMMMTACDVSAIAKPWEV 632
KS F+++V + W ++E E L ++ SA+ K WEV
Sbjct: 244 KSAFVKIVLEDQDPWASKEGAENLLKLLPDKDLASALRKKWEV 286
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 167 IGIQNAQLFESSVLEYKRNQILLALARSIFEEQSNLECLVTKIMTEARD---LLKCERCA 223
+G + F+ + +Y + AL I + +SN E L+ I +R + C R
Sbjct: 600 LGPSYSGCFQGPINDYMTYKASTALTLEIQDSKSNTEDLLHSIQAFSRSPIAFMSCARDY 659
Query: 224 VFILD---TDHCESSHLERI 240
V I+D +D C S LE +
Sbjct: 660 VDIMDLQLSDFCSFSVLETL 679
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 543 HFDQCVMILNSESNNIFQALSPRDYKDVMHVVET 576
H+DQC SE+ NI+ LS + KD+ V+++
Sbjct: 258 HYDQC-----SEALNIYDTLSDAEKKDLQEVLQS 286
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,584,579
Number of Sequences: 5004
Number of extensions: 147642
Number of successful extensions: 359
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 14
length of query: 852
length of database: 2,362,478
effective HSP length: 79
effective length of query: 773
effective length of database: 1,967,162
effective search space: 1520616226
effective search space used: 1520616226
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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