GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000060-TA|BGIBMGA000060-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase, IPR001998|Xylose
isomerase, IPR003607|Metal-dependent phosphohydrolase, HD region
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    36   0.14 
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271...    35   0.31 
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853...    32   2.2  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    31   5.1  
03_02_0022 - 5054548-5054663,5054899-5055103,5055194-5055261,505...    30   6.8  

>10_08_0472 -
           18154797-18155048,18155332-18156318,18156424-18156546,
           18156654-18156808,18157611-18157824,18158977-18159077,
           18159162-18159285,18159584-18159655,18159897-18159961,
           18160167-18160233,18160917-18161015,18161099-18161167,
           18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 82  DVVGVAQIINKTDGEHTTES--TLDHNYEPRPGQITRGPVASHWYSLYYFGNQRLYTYLR 139
           + V V++++    GE TT    T D   EP   + + G     W  L      R    LR
Sbjct: 631 NTVVVSELLADIKGEPTTAEPQTSDATSEPEVSE-SEGDDEYEWEQLETLRKTRPDKELR 689

Query: 140 RKLSHSGSKEFSSRD-------VEVFRRYLTFCGIGIQNAQLFESSVLEYKRNQILLAL 191
            KL+ S  KE + +D        E++  YL FC  G      F +++   K N   L L
Sbjct: 690 EKLAKSSQKEITLKDDIPLRDRAELYETYLVFCVTGETTNVSFGTAISTKKDNSEYLML 748


>07_03_1774 +
           29425486-29425831,29426018-29426235,29426337-29427131,
           29427206-29428074,29428317-29428749,29429263-29429859
          Length = 1085

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 287 IALAVARSNKSLNISDVEQWLRDNNMSAGENSAGV-RTLLCMPIVNANKDVIGVAQLINK 345
           +ALA  +S    ++ +VE W    N    EN  G  R   C+  +    + + V+ L  +
Sbjct: 119 LALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSKLQELNNAVLVSALTEE 178

Query: 346 FTEGDVSIFEAFAIFCGLGIHNTQMYENAC 375
            T   +S F+A  +F  +G+     +++ C
Sbjct: 179 LTTDHLSKFQA-VVFTDIGLDKAYEFDDYC 207


>01_01_0014 +
           84379-84600,84737-84830,84935-85086,85212-85299,
           85348-86681,87291-87398,87500-87583
          Length = 693

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 727 HDTIDKPVEEFTALNEPLADVELTVTTLN-CAAGPPAKPLKTP 768
           H+ +++  +   +L+EPL DVE+T   L+ CA G P    +TP
Sbjct: 463 HNALEQ-CDSMASLDEPLLDVEMTCIPLDPCATGVPYSVKETP 504


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 173 QLFESSVLEYKRNQILLALARSIFEEQSNLECLVTKIMTEARDLLKCERCAVFIL 227
           Q  E S L   RN I++ALA       + ++C ++KI    RD  +  R   FIL
Sbjct: 886 QELERSDLATLRNNIMIALADFYVRYTAMVDCYMSKITKSLRDPCEVVRRQTFIL 940


>03_02_0022 -
           5054548-5054663,5054899-5055103,5055194-5055261,
           5055573-5055861,5056687-5056753,5057928-5057974
          Length = 263

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 289 LAVARSNKSLNISDVEQWLRDNNMSAGENS-AGVRTLLCMPIVNANKDVIGVAQLINKFT 347
           L V  + K+L     E  +   + S G++  A   +LLC   VN N++  G  +++  FT
Sbjct: 157 LDVGANTKALTCCHKEMTIECISGSDGKDGIAKAASLLCSTCVNGNRNTCGNGEIV--FT 214

Query: 348 EGDVS 352
           E D+S
Sbjct: 215 EADMS 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,174,119
Number of Sequences: 37544
Number of extensions: 870739
Number of successful extensions: 1782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1780
Number of HSP's gapped (non-prelim): 6
length of query: 852
length of database: 14,793,348
effective HSP length: 88
effective length of query: 764
effective length of database: 11,489,476
effective search space: 8777959664
effective search space used: 8777959664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)