GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000060-TA|BGIBMGA000060-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase, IPR001998|Xylose
isomerase, IPR003607|Metal-dependent phosphohydrolase, HD region
         (852 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   3.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    24   6.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   6.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 184 RNQILLALARSI---FEEQSNLECLVTKIMTEARDLLK 218
           RN + L+ AR+    FE +SNL  +V   +T+ R L K
Sbjct: 258 RNGVRLSSARAFITPFENRSNLHVIVNATVTKVRTLNK 295


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 48  AIKYITIQFNSEIDARTGYKTELIL 72
           AIKY+    NS +D R G  T  +L
Sbjct: 351 AIKYVQQTTNSPVDMRVGIHTGAVL 375


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  RPGHKRSKSGSVWEWRDSQLRPKTISTSGMHTPIPGKIPHKLTAIKYITIQFNSEIDART 64
          RP  + SK+G  W +  S        T  M+ P    +P  L   K+ T+   + I+  T
Sbjct: 34 RPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLP-SLPDRKFQTV---TSIEGNT 89

Query: 65 GYKTE 69
           +KTE
Sbjct: 90 -FKTE 93


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 5  RPGHKRSKSGSVWEWRDSQLRPKTISTSGMHTPIPGKIPHKLTAIKYITIQFNSEIDART 64
          RP  + SK+G  W +  S        T  M+ P    +P  L   K+ T+   + I+  T
Sbjct: 36 RPSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLP-SLPDRKFQTV---TSIEGNT 91

Query: 65 GYKTE 69
           +KTE
Sbjct: 92 -FKTE 95


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,639
Number of Sequences: 429
Number of extensions: 9516
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 852
length of database: 140,377
effective HSP length: 64
effective length of query: 788
effective length of database: 112,921
effective search space: 88981748
effective search space used: 88981748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)