GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000060-TA|BGIBMGA000060-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase, IPR001998|Xylose
isomerase, IPR003607|Metal-dependent phosphohydrolase, HD region
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family pr...    31   2.4  
At5g23400.1 68418.m02739 disease resistance family protein / LRR...    29   9.9  
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    29   9.9  

>At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 632

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 277 PR-RPHDALPAIALAVARSNKSL-----NISDVEQWLRDNNMSAGENSAGVRTLLCMPIV 330
           PR + H     + L++   NK        I+D+ + L++ +M A EN+A   TL  + ++
Sbjct: 401 PRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAA--TLFSLSVI 458

Query: 331 NANKDVIGVAQLI 343
           + NK  IG A  I
Sbjct: 459 DENKVAIGAAGAI 471


>At5g23400.1 68418.m02739 disease resistance family protein / LRR
           family protein similar to disease resistance protein
           [Lycopersicon esculentum] gi|3894383|gb|AAC78591;
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 589

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 289 LAVARSNKSLNISDVEQWLRDNNMSAGENSAGVRTLLCMPIVNANKDVIGVAQLINKFTE 348
           L++  S  +LN+  +  W+RD  +S   N AG +     P +     +  +  L + F  
Sbjct: 328 LSIDLSYNNLNLGAIPSWIRDKQLS-DINLAGCKLRGTFPKLTRPTTLTSL-DLSDNFLT 385

Query: 349 GDVSIF 354
           GDVS F
Sbjct: 386 GDVSAF 391


>At1g58190.1 68414.m06605 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 40  GKIPHKLTAIKYITIQFNSEIDARTGY--KTELILCMPICNYEGDVVGVAQIINKTDGEH 97
           G IPH LT + YI + FN   +  +G        L + + NY G+       INK+  ++
Sbjct: 808 GPIPHDLTKLDYIVV-FNVSYNNLSGLIPSQGKFLSLDVTNYIGNPFLCGTTINKSCDDN 866

Query: 98  TT 99
           T+
Sbjct: 867 TS 868


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,478
Number of Sequences: 28952
Number of extensions: 737749
Number of successful extensions: 1640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 3
length of query: 852
length of database: 12,070,560
effective HSP length: 87
effective length of query: 765
effective length of database: 9,551,736
effective search space: 7307078040
effective search space used: 7307078040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)