GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000058-TA|BGIBMGA000058-PA|undefined
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    61   2e-10
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    27   2.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   4.4  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.9  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    26   5.9  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   5.9  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   5.9  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    26   5.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   7.7  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 249 AERRMLPLVLSWASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVKSLEGLSM 304
           A R  +PL+L++A ++HK QG T+D   V LG ++FE+GQAYVALSR  + EGL +
Sbjct: 706 ASRSQIPLILAYAISIHKAQGQTLDRVKVDLG-RVFEKGQAYVALSRATTQEGLQV 760


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 244 FNYGTAERRMLPLVLS--WASTVHKKQGSTVDHAVVYLGSKLFEEGQAYVALSRVK 297
           F Y   ++R+ P+V+S  W      K  S   H +   G   +EE    + L  ++
Sbjct: 66  FGYAMVQKRVFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIR 121


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 21   ELSSKTTLLLCSRCQTHVTSNKTIAPSKAYWNNLDPGSIPDEIQALTQAEQRLLCRII-- 78
            +LS + ++L  +  +   +S++T     +YW+        + +QA TQAEQR + R+I  
Sbjct: 1114 DLSLRNSVLQSANSKRQTSSHRT-----SYWDTEAEKRDTERMQAETQAEQR-VARVIKH 1167

Query: 79   PLVK 82
            PL K
Sbjct: 1168 PLFK 1171


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 149 WLTRNNPLYRDVRIDENVQISEQDLIRLSV 178
           WL+R    +R  + DE  QI+++D+  + V
Sbjct: 33  WLSRIRDRFRGTKEDEKKQIADKDMAAMKV 62


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 121 VVVTECLENLNITREFTISREKFYSALRWLTRNNP 155
           VVV  C E LNI+  F  ++ K+ + LR   R NP
Sbjct: 34  VVVVRC-EELNISGHFFRNKLKYLAYLRKACRYNP 67


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 121 VVVTECLENLNITREFTISREKFYSALRWLTRNNP 155
           VVV  C E LNI+  F  ++ K+ + LR   R NP
Sbjct: 34  VVVVRC-EELNISGHFFRNKLKYLAYLRKACRYNP 67


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 93  YGFRGQDIFEVSERLPNMLPRSSSQ 117
           YGFR + I++ +ERL N +     Q
Sbjct: 42  YGFRAEPIYDQTERLANQVAELQEQ 66


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 121 VVVTECLENLNITREFTISREKFYSALRWLTRNNP 155
           VVV  C E LNI+  F  ++ K+ + LR   R NP
Sbjct: 34  VVVVRC-EELNISGHFFRNKLKYLAYLRKACRYNP 67


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 145 SALRWLTRNNPLYRDVRIDENVQISEQDLIRL 176
           SAL +L +N+ ++RD++I EN+ IS+   I++
Sbjct: 252 SALSYLHQNSVVHRDLKI-ENILISKTGDIKI 282


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,064
Number of Sequences: 5004
Number of extensions: 59339
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 10
length of query: 305
length of database: 2,362,478
effective HSP length: 72
effective length of query: 233
effective length of database: 2,002,190
effective search space: 466510270
effective search space used: 466510270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)