GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000058-TA|BGIBMGA000058-PA|undefined
         (305 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.     27   0.50 
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   6.1  

>AJ297933-1|CAC35453.2|  392|Anopheles gambiae Ag9 protein protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 204 RIIRASWHQGDHSVFTSGFA----GVQCNGMHAIYPKAIQFPAKFN--YGTAERRMLPLV 257
           R I  SW +G+     SGFA    G++ + +     K + F  +    Y     +++P V
Sbjct: 165 RSITVSWDEGEAKALQSGFALKGRGMELSELVVFNGKLLTFDDRTGLVYEIEGEKVIPWV 224

Query: 258 L-----SWASTVHKKQGSTVDHAVVYLGS 281
           L        S   K + +TV   V+Y+GS
Sbjct: 225 LLMDGDGRTSKGFKSEWATVKDQVLYVGS 253


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 125 ECLENLNITREFTISREKFYSALRWLTRNNPLYRD 159
           EC +     R F I+  +FY+   W+  + P +R+
Sbjct: 380 ECSKRKEQNRMFNINEREFYN---WIRNDKPNFRE 411


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,511
Number of Sequences: 2123
Number of extensions: 13340
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 516,269
effective HSP length: 64
effective length of query: 241
effective length of database: 380,397
effective search space: 91675677
effective search space used: 91675677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)