Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
         (160 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   5.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   5.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.6  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 66  EHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKHLRKVSKFIATQNERVYNPRGVH 125
           EH ++++   C   C   L+C +A  ++  T T       K+     T    +    GVH
Sbjct: 128 EH-KLSDPNQC-VICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVH 185

Query: 126 ITDPILRGL 134
              P +R L
Sbjct: 186 RAKPPMRVL 194


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 72  ETADCSTYCEGCLACLTAYFIYICTETHYEKHLRKVS 108
           ET+ C  +C G +     + I++  + +      K+S
Sbjct: 522 ETSICKNFCFGFITKQLIFMIFVTYQLYCWSSFLKIS 558


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 87  LTAYFIYICTETHYEKHLRKVSK 109
           LTAY +YI T     + L  V++
Sbjct: 54  LTAYMVYITTNLRITQKLSIVTQ 76


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,730
Number of Sequences: 317
Number of extensions: 1330
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 114,650
effective HSP length: 52
effective length of query: 108
effective length of database: 98,166
effective search space: 10601928
effective search space used: 10601928
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)