Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
(160 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 30 0.14
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.14
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.3
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 2.3
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 4.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 24 9.4
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 67 HFEMAETADCSTYC-----EGCLACLTAYFI--YICTETHYEKHLRKVSKFIATQNERVY 119
H A D +T C E CL L A I Y+C+E H + + F ++ R Y
Sbjct: 6 HSFWATAVDTATSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPY 65
Query: 120 NPRGV 124
P G+
Sbjct: 66 RPPGL 70
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.14
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 55 QTFEHTIERLNEHFEMAETADCSTYCEGCLACLTA 89
+ +EHT E + E E+ DC EGC C+T+
Sbjct: 976 KAYEHTDELITMAIERIESCDCKVR-EGCPGCITS 1009
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 1.3
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 29 QRDYSEGTAVKFQTRFPPELEERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLACLT 88
Q +Y +++K +R P +L+ +++Q F H IE FE A+ + + +
Sbjct: 99 QFNYYPISSIKKFSRIPVQLQPPLNKQNFPHNIE-----FETADFLRWESKRKFKIILAL 153
Query: 89 AYFIYICTETHYE---KHLRKVSKFIATQNERVYNPRG 123
+ ++ H E K K+S + T + P+G
Sbjct: 154 SVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQG 191
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 87 LTAYFIYICTETHYEKHLRKVSK-FIATQNERVYNPRGVHI 126
L+AY I E + +K + K FI N + +NPR H+
Sbjct: 151 LSAYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPRKTHV 191
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 50 ERIDRQTFEHTIERLNEHFEMAETADCSTY 79
+RID F+ ++RL E+ ET + ++Y
Sbjct: 777 KRIDSHIFDGDVQRLTRILELLETKNAASY 806
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 50 ERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCLACLTAYFIYICTETHYEKHLRKVSK 109
E D+ H + +E +++ + STY + A L + ++ +T +E LR+
Sbjct: 235 EAFDQLVSNHLLTA-DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 110 FIATQN 115
++++ N
Sbjct: 294 YLSSIN 299
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 94 ICTETHYEKHLRKVSKFIATQNER 117
I TE +YE+ LR K + NER
Sbjct: 56 IVTEVNYEQQLRNSEKKLLQSNER 79
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 35 GTAVKFQTRFPPELEERIDRQTFEHTIERLNEHFEMAETA 74
G+ K+Q +LE I R +FEH+I +N + ETA
Sbjct: 581 GSLSKYQNFTKEKLESEIVRFSFEHSI-LINTSNDEKETA 619
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 89 AYFIYICTETHYEK--HLRKVSKFIATQNERV 118
++F IC+ETH E H+ +S A N+R+
Sbjct: 194 SWFATICSETHIENEWHVGPLSVVSAYPNDRL 225
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,868
Number of Sequences: 5004
Number of extensions: 25872
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 10
length of query: 160
length of database: 2,362,478
effective HSP length: 68
effective length of query: 92
effective length of database: 2,022,206
effective search space: 186042952
effective search space used: 186042952
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -