GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
         (160 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   3e-22
SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)               27   5.5  

>SB_56814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score =  101 bits (242), Expect = 3e-22
 Identities = 42/78 (53%), Positives = 54/78 (69%)

Query: 25  KIFIQRDYSEGTAVKFQTRFPPELEERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCL 84
           K+F+QRDYS GTA +FQT+FPPELE +IDR  F+ T+  +N   + AE     +Y EGCL
Sbjct: 17  KVFLQRDYSHGTACRFQTKFPPELENKIDRGIFDQTVNTINSILDDAEKVGVQSYIEGCL 76

Query: 85  ACLTAYFIYICTETHYEK 102
            CLTAY IY C +T Y +
Sbjct: 77  GCLTAYLIYSCIQTQYAR 94


>SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)
          Length = 461

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 33  SEGTAVKFQTRFPPELEERIDRQTFEH--TIERLNEHFEMAETADCSTYCEGCLACLTAY 90
           + G       R  P LEE  + + F    T+E +N  +    T   S++  G +  L   
Sbjct: 279 TSGIVFPCYVRLKPALEELKELREFHDPDTVELMN--WIKTSTPPGSSFT-GSMQLLAG- 334

Query: 91  FIYICTETHYEKHLRKVSKFIATQNERVY 119
            + +CT+ H   H    +KF+  + ++VY
Sbjct: 335 -VKLCTDRHVTNHPHYENKFLRMRTKQVY 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,178,512
Number of Sequences: 59808
Number of extensions: 195529
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 2
length of query: 160
length of database: 16,821,457
effective HSP length: 77
effective length of query: 83
effective length of database: 12,216,241
effective search space: 1013948003
effective search space used: 1013948003
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)