GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000057-TA|BGIBMGA000057-PA|IPR007087|Zinc finger,
C2H2-type
         (160 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-19|CAB54456.2|  177|Caenorhabditis elegans Hypothetical p...   102   1e-22
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81553-2|CAB04491.2|  373|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z70035-11|CAA93872.1|  388|Caenorhabditis elegans Hypothetical p...    27   8.4  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z99281-19|CAB54456.2|  177|Caenorhabditis elegans Hypothetical
           protein Y57G11C.33 protein.
          Length = 177

 Score =  102 bits (244), Expect = 1e-22
 Identities = 47/118 (39%), Positives = 73/118 (61%)

Query: 25  KIFIQRDYSEGTAVKFQTRFPPELEERIDRQTFEHTIERLNEHFEMAETADCSTYCEGCL 84
           +IFIQRDYS+G  V+F+  +P  L E++ R  +E+TI R+N  F  AE     T  E  L
Sbjct: 39  QIFIQRDYSKGLDVQFEAEYPARLTEKVPRDVWENTIVRINRIFADAEAITPQTIFETVL 98

Query: 85  ACLTAYFIYICTETHYEKHLRKVSKFIATQNERVYNPRGVHITDPILRGLRVIEITMI 142
            C T Y  Y  T++ Y + L ++ +F+  +N  +Y+  G HI +P+ RGLRV+EI+++
Sbjct: 99  GCFTCYASYAITKSTYRRKLDELQEFLNRENREIYHHVGFHIRNPMERGLRVLEISLL 156


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 49   EERI--DRQTFE-HTIERLNEHFEMAETADCSTYCEGCLACLTA 89
            E+RI  D+Q F  H IE      +  + A+C+ YC G   C TA
Sbjct: 1327 EKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTA 1370


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 49   EERI--DRQTFE-HTIERLNEHFEMAETADCSTYCEGCLACLTA 89
            E+RI  D+Q F  H IE      +  + A+C+ YC G   C TA
Sbjct: 1327 EKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTA 1370


>Z81553-2|CAB04491.2|  373|Caenorhabditis elegans Hypothetical
           protein F56H6.2 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 115 NERVYNPRGVHITDPILRGLRVIEITMIDVPNCQ 148
           NE+VY P G  I  P    L V  + M++ P CQ
Sbjct: 75  NEKVYKPFGYEILHPT---LPVPTLRMLNEPTCQ 105


>Z70035-11|CAA93872.1|  388|Caenorhabditis elegans Hypothetical
           protein R09D1.13 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 50  ERIDRQTFEHTIERLNEHFEMAETADC--STYCEGCLACLTAYFIYICTETHYEKHLRKV 107
           E ++    +H ++    +FE+    +   S   E C++ L ++   I     Y  H+  +
Sbjct: 165 ESVELGNLQHVLKITKNNFELVGVPETEFSGLDEFCVSDLHSFAFQIANGMEYLTHIPVI 224

Query: 108 SKFIATQN 115
            +F+A +N
Sbjct: 225 HRFLALRN 232


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 29  QRDYSEGTAVKFQTRFPPELEERIDRQTFEHTIERLNEHFE 69
           Q  +++   V F    P + E  I +    HTI ++NEHF+
Sbjct: 882 QLKFAKFNNVLFGKPKPRQREGSISKTKDMHTIRKINEHFD 922


>AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.2 protein.
          Length = 235

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 87  LTAYFIYICTETHYEKHLRKVSKFI 111
           +  Y+IY+CT TH  ++   + KF+
Sbjct: 141 MEVYYIYLCTWTHPSQNEYNIVKFL 165


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,875,810
Number of Sequences: 27539
Number of extensions: 150570
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 12,573,161
effective HSP length: 76
effective length of query: 84
effective length of database: 10,480,197
effective search space: 880336548
effective search space used: 880336548
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)