Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000056-TA|BGIBMGA000056-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    73   5e-14
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    66   8e-12
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    28   2.6  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    28   2.6  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 195 TDEEIREQIDIFLIASFDTSATALIYLLTVVGSYPEVQQKIYDEIL-AEVGD-NKDVTKD 252
           +DEEI      FL AS D +++A+ +L  ++  +P+V QK+ +E L    GD +  ++ D
Sbjct: 305 SDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLD 364

Query: 253 VLPKLVYLEAVIKETLRMYSVVPAIARKTDIDLKL-KNYTIPKGSS-IGIMLGTLHQHPQ 310
           ++ K+ Y  AV+KE LR+   V  +  +      +  +YT+PK +  I  + G LH    
Sbjct: 365 LMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKV 424

Query: 311 WGPDAHQFRPERWFTENLNVFAP-----FSMGKRNCIGKVYAM 348
           + P+   F P+RW    L   +P     F  G   C+G+ YA+
Sbjct: 425 Y-PEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 66.1 bits (154), Expect = 8e-12
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 24/210 (11%)

Query: 194 LTDEEIREQIDIFLIASFDTSATALIYLLTVVGSYPEVQQKIYDEILAEVGDNKDVTKDV 253
           L + EI   +   L+A   TSA  ++++L ++GS PE+ + +++E    VG+N ++  D 
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQ 332

Query: 254 LPKLVYLEAVIKETLRMYSVVPAIARKTDIDLKL--KNYTIPKGSSIGIMLGTLHQHPQW 311
              +  L  VI+ETLR++  + +  RK   DL +      IP  + +    G      ++
Sbjct: 333 YKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEY 392

Query: 312 GPDAHQFRPERW---FTENLNV-----------------FAPFSMGKRNCIGKVYAMMSM 351
              A  F P+RW     E+ N                  + PF  G+  CIG+ +A M +
Sbjct: 393 FTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHL 452

Query: 352 KVLLVHVFRHYKVT--GDISNTEHRLGVLL 379
             ++      Y  T  G + N ++   V L
Sbjct: 453 STIISKFVHDYTWTLIGKVPNVDYSSMVAL 482


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 181 LDFILDQDKSKQFLTDEEIREQIDIFLIASFDTSATALIYLLTV 224
           L  +  Q + +Q+LT+  +++     L AS D+S   L Y+ T+
Sbjct: 243 LRLVARQKQQRQYLTETFVKDCTSSILTASSDSSYILLFYVSTI 286


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 239 ILAEVGDNKDVTKDVLPKLVYLEAVIKETLRMYSVVPAIARK-TDIDLKL 287
           +L E+     V +++ PKLVY+ +V++   ++YS V  + ++  DI+L++
Sbjct: 586 LLTEIDGFMAVVEELTPKLVYVPSVLE---KIYSSVGYVTQRIEDIELRI 632


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,107
Number of Sequences: 5004
Number of extensions: 78434
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 5
length of query: 395
length of database: 2,362,478
effective HSP length: 74
effective length of query: 321
effective length of database: 1,992,182
effective search space: 639490422
effective search space used: 639490422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)