Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000056-TA|BGIBMGA000056-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I
         (395 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   151   1e-38
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    93   4e-21
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    88   1e-19
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   2.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   6.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  151 bits (365), Expect = 1e-38
 Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 10/226 (4%)

Query: 179 SLLDFILDQDKSKQFLTDEEIREQIDIFLIASFDTSATALIYLLTVVGSYPEVQQKIYDE 238
           + LD +++  ++   LTD+E++EQ+D  +    DT+A+   + L V+G +P++Q+K+  E
Sbjct: 318 AFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQE 377

Query: 239 ILAEVGDN-KDVTKDVLPKLVYLEAVIKETLRMYSVVPAIARKTDIDLKLKN--YTIPKG 295
           +    GD+ +  T     ++ YLE  + ETLRMY  VP IAR+   DLKL +  YTIP G
Sbjct: 378 LDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAG 437

Query: 296 SSIGIMLGTLHQHPQWGP-----DAHQFRPERWFTENLNVFAPFSMGKRNCIGKVYAMMS 350
            ++ I    LH+ P   P     D   F PE+    +   F PFS G R+C+G+ YAM+ 
Sbjct: 438 CTVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLK 497

Query: 351 MKVLLVHVFRHYKVTGDISNTEHRL--GVLLKPATGHHIKLDKRNK 394
           +K++L  + R+++V  D+  +E RL   ++LK A G  I+L+ R +
Sbjct: 498 LKIVLSTILRNFRVRSDVKESEFRLQADIILKRADGFKIRLEPRKQ 543



 Score = 66.1 bits (154), Expect = 5e-13
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 29  PGKLPIIGHGLMFFGDGKHIHKTFKWLGEEAIKLGGVVSVNFGPIKVYIVADPDDSAVVA 88
           P  LP+IG+ L  FG    +   F  + ++A     VV +  GP  V  + DP D  ++ 
Sbjct: 47  PPALPLIGNALDLFGSPDAM---FSQVLKKAENFKDVVKIWVGPKLVICLIDPRDVEIIL 103

Query: 89  TN--CLAKGFFYDFSNAYIGNGILCAKLPLWKQQRKALNPAFKQQILNNFMDIFNNQGRR 146
           ++   + K   Y F   ++G+G+L +    W+  RK + P F   +L +F+D+FN   R 
Sbjct: 104 SSNVYIDKSTEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARS 163

Query: 147 LIMQLAAHGPGSFDHHH 163
           ++ ++       FD H+
Sbjct: 164 VVEKMRKENGKEFDCHN 180


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 93.1 bits (221), Expect = 4e-21
 Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 12/210 (5%)

Query: 194 LTDEEIREQIDIFLIASFDTSATALIYLLTVVGSYPEVQQKIYDEILAEVG-DNKDVTKD 252
           LTD  I  Q  +F +A F+TS+T +   L  +    +VQ+K+ +EI      +NK++  D
Sbjct: 289 LTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEINTFCPKNNKELKYD 348

Query: 253 VLPKLVYLEAVIKETLRMYSVVPAIARKTDIDLKLKN--YTIPKGSSIGIMLGTLHQHPQ 310
            + ++ YL+ V KETLRMY     + RK   D    +   TIPK   I I    +H+   
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDSA 408

Query: 311 WGPDAHQFRPERWFTENLNV-----FAPFSMGKRNCIGKVYAMMSMKVLLVHVFRHYKV- 364
             P+   F PER+  + +       + PF  G RNCIG  +A+   KV L+ + R++KV 
Sbjct: 409 IYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLITILRNHKVE 468

Query: 365 --TGDISNTEHRLGV-LLKPATGHHIKLDK 391
                I   E   G  LL P  G ++K+ K
Sbjct: 469 VCEKTIIPYEFDPGAFLLSPKDGIYLKITK 498


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 88.2 bits (209), Expect = 1e-19
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 4/163 (2%)

Query: 206 FLIASFDTSATALIYLLTVVGSYPEVQQKIYDEILAEVGDNKDVTKDVLPKLVYLEAVIK 265
           F+ A   T    L++L  ++G  P VQ K+Y+E  A      D+T D L K  YL A I 
Sbjct: 327 FIAAGIHTLGNTLVFLFDLIGRNPTVQNKLYEETYALAPAGCDLTIDNLRKAKYLRACIT 386

Query: 266 ETLRMYSVVPAIARKTDIDLKLKNYTIPKGSSIGIMLGTLHQHPQWGPDAHQFRPERWFT 325
           E+LR+      IAR  D  ++L  Y +  G+ + +       + +   DA ++ PERW T
Sbjct: 387 ESLRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTT 446

Query: 326 ENLN----VFAPFSMGKRNCIGKVYAMMSMKVLLVHVFRHYKV 364
                   + APF  G+R C GK +  ++++++L  + R +++
Sbjct: 447 PTTPHSPLLVAPFGAGRRICPGKRFVDLALQLILAKIIREFEI 489


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 212 DTSATALIYLLTVVGSYPEVQQKIYDEILAEVGDNKDVTKDVLP 255
           +T  T +  L+ VV  Y   + K   + + +  +NKD+TK  LP
Sbjct: 94  NTILTTMPLLINVV-KYLGGKHKFISKKIKKTMENKDITKRPLP 136


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 151 LAAHGPGSFDHHHPILINN--LESS--LQETISLLDFILDQDKSKQFL 194
           L A  P   D +    INN  LE    L E IS  D ILDQ+K K  +
Sbjct: 790 LFASMPNFADFYSEESINNQGLECLRFLNEVISDFDAILDQNKFKDII 837


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 96  FFYDFSNAYIGNGILCAKLPLW 117
           +FYD+SN       + A +P W
Sbjct: 30  YFYDYSNRTQALESIIANIPTW 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,495
Number of Sequences: 429
Number of extensions: 4965
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 395
length of database: 140,377
effective HSP length: 59
effective length of query: 336
effective length of database: 115,066
effective search space: 38662176
effective search space used: 38662176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)