Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   4.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.1  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 174 GLRNEKDSFKYEDINAKDDLGNEVH 198
           G RN + SFK ++INA  +L   VH
Sbjct: 35  GYRNGEGSFKPQNINA--NLCTHVH 57


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 7   AVAVLLLSENASGHRVKR 24
           A+A+LL  E    HR+KR
Sbjct: 102 ALALLLSPEVGKDHRIKR 119


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 62  DTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFN 121
           D  Q   +++D N    +++ +  +++K +       N     IA   ++      E  +
Sbjct: 114 DLIQLEQIHLDDNRIESLER-RAFMNLKSLKRL----NLKGNKIATIAYETFQNLPELED 168

Query: 122 LSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEIIANPVAAFDVVTQTNDLGGLRNEK 179
           L    N I  +   +  +  SLG    +++  ++I   VA      Q   LGGL+N K
Sbjct: 169 LDLAYNSISSLDFNIFDQVGSLGMFHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIK 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,109
Number of Sequences: 317
Number of extensions: 1780
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)