Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
         (209 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.099
SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)            32   0.40 
SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)             31   0.69 
SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)             30   1.6  
SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             28   6.5  
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   28   6.5  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_17946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 43  KKSKIFRTYADQILLSNKQDT-TQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCT 101
           KKSK+       +   NK  + TQ+ V+N     +  +K+AK    +  +D Y     C 
Sbjct: 45  KKSKVLTYLGAWMPTDNKDGSLTQTEVINFGRYFAGELKKAKIPWSLNVLDSYYDTEKCE 104

Query: 102 KTAIANPDFDVQDVGAEKFNLSFDGNQIFEV 132
                    D+QD+   K N+S     I +V
Sbjct: 105 WLT------DIQDIKGRKLNMSLVLENILDV 129


>SB_28262| Best HMM Match : Sarcoglycan_1 (HMM E-Value=0.95)
          Length = 255

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 106 ANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGH 149
           A   F  +D  AEK  ++FDGN++  +   +K +E  +  I+ H
Sbjct: 62  AKKGFRFEDPYAEKEVITFDGNKVLFLPEYIKGEEIGMNRIISH 105


>SB_39182| Best HMM Match : Cellulase (HMM E-Value=0.00018)
          Length = 949

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 43  KKSKIFRTYADQILLSNKQDT-TQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCT 101
           KKSK+       +   NK  + TQ+ V+N     +  +K+AK    +  +D Y     C 
Sbjct: 266 KKSKVLTYLGAWMPTDNKDGSLTQTEVINFGRYFAGELKKAKIPWSLNVLDSYYDTEKCE 325

Query: 102 KTAIANPDFDVQDVGAEKFNLSFDGNQIFEV 132
                     +QD+   K N+S     I +V
Sbjct: 326 WLT------GIQDIKGRKLNMSLVLENILDV 350


>SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 28  ENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLH 87
           +NFN ++  +   PL  +++      Q  L  +   ++  + N+      R  Q K    
Sbjct: 554 KNFNQIMERHAPRPLIAAQLKVEAQAQRKLEQQVVESRKEICNLMKWSRARDNQRKVVAE 613

Query: 88  MKEIDEYIHVTNCTKTAIANPD---FDVQDVGAEKFNLSF-DGNQIFEVKNEVKAKENSL 143
           + E  +  H+ +   + +A+     F+ +D G     +SF D   +F+  NE+ + + S 
Sbjct: 614 I-ERQQNRHLEDWQPSIVASTPPLPFNARDTGKRPERVSFFDALDMFKAANEIFSIDQSP 672

Query: 144 GNILGHLNS 152
           G +LG  N+
Sbjct: 673 GRLLGVENT 681


>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
          Length = 855

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 90  EIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIF 130
           +I E   +  C +  +  PDF+V+DVG EK + +  G+  F
Sbjct: 402 DIKELEAIATCDENVVLFPDFNVKDVG-EKISKTIYGHDCF 441


>SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 164 DVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNE 196
           DV    ND  G + EK+++ Y+D++  DD G +
Sbjct: 69  DVDVDGNDDDGEKEEKENYVYDDVDGDDDDGEK 101


>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 43  KKSKIFRTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTK 102
           K S+    YA  + + N    TQ+S+      E  R K  K DL     D    +   T+
Sbjct: 45  KSSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKFDLTKLSNDTRRQIKMVTE 104

Query: 103 TAIANPDFDVQ 113
           TA ++ D DVQ
Sbjct: 105 TA-SSSDKDVQ 114


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 111 DVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEII 156
           ++QD+GAE      D  +  EV+    A E+  GN+   +N+  ++
Sbjct: 78  EIQDLGAETHYFECDVRKKDEVEKVANAVEDQAGNVTILINNAGVV 123


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 116 GAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEIIANPV-AAFDVVTQTNDLGG 174
           G +  N S DG+ +    N+V    N   ++    N G+ ++N      DV    ND   
Sbjct: 194 GDDVSNGSSDGDDVSNGANDVSNGANDGDDVSNVANDGDDVSNGANDGDDVSNGANDCDD 253

Query: 175 LRNEKDSFKYEDINAKDDLGN-EVHSYPN 202
           + N   S   +D++  D L N  + SY N
Sbjct: 254 VTNCASS--GDDVSDGDGLSNGSIDSYDN 280


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 70  NIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQI 129
           N +  +     +A+ D    +I+E + V +    A   PDFD      +K  L    N++
Sbjct: 515 NAELKDENEALKAEIDALKPKIEEEVVVQSAAPVAAGEPDFD------DKEQLDMLENEL 568

Query: 130 FEVKNEVKAKE 140
            EVK +++  E
Sbjct: 569 REVKQKLEGVE 579


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 89  KEIDEYIHVTNCTK--TAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNI 146
           K  ++Y+ + +C    T +AN D      G  KF+++F+   +   + E+     SLG +
Sbjct: 142 KRANQYMAIPSCNLCLTDVANSDQRFVIGGKGKFDIAFELKNLSSPRRELPEDLESLGKM 201

Query: 147 L 147
           L
Sbjct: 202 L 202


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 18   SGHRVKRTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNEST 77
            +G R+   N  +   + + Y +  LK +    T  + ++L ++Q+TT   + ++ S +ST
Sbjct: 1015 AGDRILAVNGTSLEQVSHEYAVMQLKTAP---TLVELVVLQSQQNTTAFDISSVPSADST 1071

Query: 78   -------RMKQAKTDLHMKEIDEYIHVTNCTKTAIANP 108
                    +K   T  H   +      T  + T+  +P
Sbjct: 1072 NEEPDTLEVKSLITPSHQNNLQNAFATTTMSPTSSQSP 1109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,501,657
Number of Sequences: 59808
Number of extensions: 255590
Number of successful extensions: 454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 14
length of query: 209
length of database: 16,821,457
effective HSP length: 79
effective length of query: 130
effective length of database: 12,096,625
effective search space: 1572561250
effective search space used: 1572561250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)