Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 0.68
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 2.1
09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475 29 3.6
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 29 3.6
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 28 4.8
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 28 6.3
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.1 bits (67), Expect = 0.68
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 57 LSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVG 116
L K D ++ V+ + ES R+K+A+ D H+ EI+ +T + V D
Sbjct: 516 LRAKVDASERDVMKL--KESIRIKEAEVDGHISEIETIGQAYEDMQTQNQHLLQQVADRD 573
Query: 117 AEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNS 152
L D ++ + + A++N L L H+NS
Sbjct: 574 DFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQHVNS 609
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 29.5 bits (63), Expect = 2.1
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 49 RTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHV-TNCTKTAIAN 107
++Y + ++ KQ + + LN NE KT+ H KE++E + V T + AI +
Sbjct: 470 KSYNEMVVTQLKQMSEDNQQLNYVKNE-----MVKTERHSKEVEEALGVETQKLQGAIED 524
Query: 108 --------PDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNILGHLNSGEIIANP 159
+ + V +FN F QI ++ + + KEN +L E +A
Sbjct: 525 NIILKRKTKEMLSECVEQMEFNAKFYHEQIERLRKDTEEKENEFERLL-----QEELARA 579
Query: 160 VAAFDVVTQTNDLGGLRNEK 179
+ DV ++T + LR E+
Sbjct: 580 IEC-DVDSETTENCKLREEQ 598
>09_02_0025 + 3088084-3088319,3089582-3089627,3089720-3090475
Length = 345
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 40 NPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNES-TRMKQAKTDLHMKEIDEYIHVT 98
N LKK + Y +Q+ SNK+ + V+ +D E R AK + E V
Sbjct: 197 NELKKQPKWHAYLEQLDKSNKRKADYNDVIPLDDEEDIPRPIGAKASKAQRSCKEKSKVQ 256
Query: 99 NCT 101
CT
Sbjct: 257 VCT 259
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 52 ADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC---------TK 102
++ +L NK + S++ ++ + + T L D Y+HV T
Sbjct: 371 SEALLRLNKLEEADSTITSLSKLDIASLSSMSTKLSGMVADSYVHVVEAQVNMAFGSKTS 430
Query: 103 TAIANPDFDVQDVGAEKFNLSFDGN-QIFEVKNEVK--AKENSLGNIL 147
T + + FD+ AEK + GN ++ + N ++ A+ GN L
Sbjct: 431 TEVYSCRFDIAVTMAEKARVIDPGNTEVGRITNNIRLVAQARGQGNEL 478
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 44 KSKIFRTYADQILLSNKQDTTQSSVLN--IDSNESTRMKQAKTDLHMKEIDEYIHVTNCT 101
+S+ F+ A Q+ + S+L + + TR+K ++T LH K E I +
Sbjct: 630 ESQKFKPSAVQLPQGESNASENESLLKDLLSDSAFTRLKDSETGLHQKSPPELIEMALKY 689
Query: 102 KTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGNIL 147
+A P V D G+ + + DG + + + + SLG ++
Sbjct: 690 YDEVALPKL-VADFGSLELS-PVDGRTLTDFMHTRGLQMRSLGQVV 733
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 90 EIDEYIHVTNCTKTAIANPDFDVQDVGAEKFNLSFDGNQIFEVKNEVKAKENSLGN 145
++ + IH +A PD +D E +L +F+ K+E+K + N LG+
Sbjct: 563 QLAQKIHEVLLENGVVAPPDLFSEDSMEEPKDLIVYDTTLFQSKDEMKKRMNELGS 618
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,378,218
Number of Sequences: 37544
Number of extensions: 202158
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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