Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
(209 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119481-1|AAM50135.1| 1288|Drosophila melanogaster GH07148p pro... 31 1.5
AE014298-1522|AAF47973.2| 1288|Drosophila melanogaster CG1582-PA... 31 1.5
BT029293-1|ABK30930.1| 681|Drosophila melanogaster RT01152p pro... 29 3.5
BT029292-1|ABK30929.1| 681|Drosophila melanogaster RT01151p pro... 29 3.5
BT029291-1|ABK30928.1| 681|Drosophila melanogaster RT01150p pro... 29 3.5
BT010123-1|AAQ22592.1| 489|Drosophila melanogaster AT19280p pro... 29 3.5
AE014297-3156|AAF55998.2| 681|Drosophila melanogaster CG31160-P... 29 3.5
U35631-2|AAB61476.1| 1186|Drosophila melanogaster MEI-218 protein. 29 4.6
BT023750-1|AAZ41758.1| 1186|Drosophila melanogaster SD24912p pro... 29 4.6
AY122070-1|AAM52582.1| 1186|Drosophila melanogaster AT14088p pro... 29 4.6
AE014298-2524|AAF48699.1| 1186|Drosophila melanogaster CG8923-PC... 29 4.6
AE014298-2523|AAN09433.2| 1186|Drosophila melanogaster CG8923-PB... 29 4.6
BT023498-1|AAY84898.1| 1190|Drosophila melanogaster LD32453p pro... 28 8.1
AY069344-1|AAL39489.2| 985|Drosophila melanogaster LD05471p pro... 28 8.1
AF179287-1|AAD52673.1| 1179|Drosophila melanogaster SMC2 protein. 28 8.1
AE013599-1965|AAF58197.1| 1179|Drosophila melanogaster CG10212-P... 28 8.1
>AY119481-1|AAM50135.1| 1288|Drosophila melanogaster GH07148p
protein.
Length = 1288
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 49 RTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEI-DEYIHVTNCTKTAIAN 107
R + + L + D ++V +++ K KT+LH+ + DE +T T I
Sbjct: 6 RKHMEDCFLRSPSDIRTTNVPAAPKSQAADNKSRKTELHVLRLNDESRQMTMDTLRQIHG 65
Query: 108 PDFDVQDVGAEK 119
P+F + D+ K
Sbjct: 66 PEFQLDDISKYK 77
>AE014298-1522|AAF47973.2| 1288|Drosophila melanogaster CG1582-PA
protein.
Length = 1288
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 49 RTYADQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEI-DEYIHVTNCTKTAIAN 107
R + + L + D ++V +++ K KT+LH+ + DE +T T I
Sbjct: 6 RKHMEDCFLRSPSDIRTTNVPAAPKSQAADNKSRKTELHVLRLNDESRQMTMDTLRQIHG 65
Query: 108 PDFDVQDVGAEK 119
P+F + D+ K
Sbjct: 66 PEFQLDDISKYK 77
>BT029293-1|ABK30930.1| 681|Drosophila melanogaster RT01152p
protein.
Length = 681
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 150 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHSYPNS 203
+NS E P+ + Q DLGGL+ E D + ++A V S +S
Sbjct: 245 MNSEEFFLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSS 298
>BT029292-1|ABK30929.1| 681|Drosophila melanogaster RT01151p
protein.
Length = 681
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 150 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHSYPNS 203
+NS E P+ + Q DLGGL+ E D + ++A V S +S
Sbjct: 245 MNSEEFFLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSS 298
>BT029291-1|ABK30928.1| 681|Drosophila melanogaster RT01150p
protein.
Length = 681
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 150 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHSYPNS 203
+NS E P+ + Q DLGGL+ E D + ++A V S +S
Sbjct: 245 MNSEEFFLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSS 298
>BT010123-1|AAQ22592.1| 489|Drosophila melanogaster AT19280p
protein.
Length = 489
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 150 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHSYPNS 203
+NS E P+ + Q DLGGL+ E D + ++A V S +S
Sbjct: 48 MNSEEFFLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSS 101
>AE014297-3156|AAF55998.2| 681|Drosophila melanogaster CG31160-PA
protein.
Length = 681
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 150 LNSGEIIANPVAAFDVVTQTNDLGGLRNEKDSFKYEDINAKDDLGNEVHSYPNS 203
+NS E P+ + Q DLGGL+ E D + ++A V S +S
Sbjct: 245 MNSEEFFLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSS 298
>U35631-2|AAB61476.1| 1186|Drosophila melanogaster MEI-218 protein.
Length = 1186
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 24 RTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNE 75
++ +E LI L+ +P K++ + + I ++ +Q TTQSS ++ NE
Sbjct: 395 QSQSERPTELIYLHSRSPAKRASVTNNSSAPIRIAPRQQTTQSSGPSVVHNE 446
>BT023750-1|AAZ41758.1| 1186|Drosophila melanogaster SD24912p
protein.
Length = 1186
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 24 RTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNE 75
++ +E LI L+ +P K++ + + I ++ +Q TTQSS ++ NE
Sbjct: 395 QSQSERPTELIYLHSRSPAKRASVTNNSSAPIRIAPRQQTTQSSGPSVVHNE 446
>AY122070-1|AAM52582.1| 1186|Drosophila melanogaster AT14088p
protein.
Length = 1186
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 24 RTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNE 75
++ +E LI L+ +P K++ + + I ++ +Q TTQSS ++ NE
Sbjct: 395 QSQSERPTELIYLHSRSPAKRASVTNNSSAPIRIAPRQQTTQSSGPSVVHNE 446
>AE014298-2524|AAF48699.1| 1186|Drosophila melanogaster CG8923-PC,
isoform C protein.
Length = 1186
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 24 RTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNE 75
++ +E LI L+ +P K++ + + I ++ +Q TTQSS ++ NE
Sbjct: 395 QSQSERPTELIYLHSRSPAKRASVTNNSSAPIRIAPRQQTTQSSGPSVVHNE 446
>AE014298-2523|AAN09433.2| 1186|Drosophila melanogaster CG8923-PB,
isoform B protein.
Length = 1186
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 24 RTNAENFNALINLYKINPLKKSKIFRTYADQILLSNKQDTTQSSVLNIDSNE 75
++ +E LI L+ +P K++ + + I ++ +Q TTQSS ++ NE
Sbjct: 395 QSQSERPTELIYLHSRSPAKRASVTNNSSAPIRIAPRQQTTQSSGPSVVHNE 446
>BT023498-1|AAY84898.1| 1190|Drosophila melanogaster LD32453p
protein.
Length = 1190
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 53 DQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC 100
DQ+++ K Q L+ + ++KQ + DLHM++ D + C
Sbjct: 463 DQLVVEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRC 510
>AY069344-1|AAL39489.2| 985|Drosophila melanogaster LD05471p
protein.
Length = 985
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 53 DQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC 100
DQ+++ K Q L+ + ++KQ + DLHM++ D + C
Sbjct: 258 DQLVVEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRC 305
>AF179287-1|AAD52673.1| 1179|Drosophila melanogaster SMC2 protein.
Length = 1179
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 53 DQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC 100
DQ+++ K Q L+ + ++KQ + DLHM++ D + C
Sbjct: 452 DQLVVEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRC 499
>AE013599-1965|AAF58197.1| 1179|Drosophila melanogaster CG10212-PA
protein.
Length = 1179
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 53 DQILLSNKQDTTQSSVLNIDSNESTRMKQAKTDLHMKEIDEYIHVTNC 100
DQ+++ K Q L+ + ++KQ + DLHM++ D + C
Sbjct: 452 DQLVVEIKNLERQLQSLDYEGGHFEKLKQRRNDLHMRKRDLKRELDRC 499
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,332
Number of Sequences: 52641
Number of extensions: 383298
Number of successful extensions: 1003
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 16
length of query: 209
length of database: 24,830,863
effective HSP length: 82
effective length of query: 127
effective length of database: 20,514,301
effective search space: 2605316227
effective search space used: 2605316227
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -