GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000055-TA|BGIBMGA000055-PA|undefined
         (209 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.69 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   3.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 79  MKQAKTDLHMKEIDEYIHVTNCTKTAIANPDFDVQDVGAEKFN 121
           +KQ  ++++ ++ +EYI + +     IAN D +  +V     N
Sbjct: 357 IKQISSNIYERQNNEYIWIVSNKYQKIANGDLNFNEVNFRILN 399


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 29  NFNALINLYKINPL 42
           NF+ + NL KI+PL
Sbjct: 298 NFSGIFNLVKISPL 311


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 29 NFNALINLYKINPL 42
          NF+ + NL KI+PL
Sbjct: 48 NFSGIFNLVKISPL 61


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 92  DEYIHVTNCTKTAIANPDFDVQDV 115
           DEY+ V +     I N DF+  DV
Sbjct: 373 DEYMLVLSNRMQKIVNDDFNFDDV 396


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,803
Number of Sequences: 429
Number of extensions: 2169
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 140,377
effective HSP length: 55
effective length of query: 154
effective length of database: 116,782
effective search space: 17984428
effective search space used: 17984428
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)