GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000054-TA|BGIBMGA000054-PA|IPR012464|Protein of unknown
function DUF1676
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    32   0.26 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    29   1.8  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    29   2.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    29   2.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    29   2.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   7.3  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 36  GGYFN--DVYRNGTFRTGHQLWDNVLNQCTAEPSVSCLQKNFFWYLDDRFRMNNDLKVSD 93
           GG  N  D +  G FR   +LW N L   +     S LQK  F Y+ D + +N D    D
Sbjct: 358 GGESNSLDDHFYGIFRGAEKLWINDLCVISTSSLPSVLQKTSFMYISDIY-VNED----D 412

Query: 94  SVCFK 98
            VCF+
Sbjct: 413 IVCFQ 417


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 442 PPSPVRDELLRVSAVKLKETNRVQTETDLVKQ 473
           PPSP+  E ++    KLK+ NR+  E D+ +Q
Sbjct: 626 PPSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQ 657


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 370 NVGEYSSSNLMPKVVAPNIPQKVPLANIGNVARP 403
           NVG    SNL  ++V  + P +V + N+ +VA P
Sbjct: 419 NVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALP 452


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 337 DIHRNAIASFKPHVNDANDINAWGLGLPPGQSMNVGEYSSSNLMPKVVAPNIPQKVP 393
           D H N++   K   +D+   N    G  P        YS  N  P V+ P +P  VP
Sbjct: 542 DKHENSVEIDKK-ADDSLPSNNKTEGYTPSVVREEKNYSEPNASPSVIPPRVPTPVP 597


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 466 TETDLVKQQQQILAANDPDTIAAEKFY 492
           T +  ++Q + IL  NDP  I+ EKFY
Sbjct: 695 TASKYLEQAKVILGQNDPTVISTEKFY 721


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 494 FLLDRVDAVLATIGASETGCKERA--VCTLYGDPFKHAPFSNLVSNELSKDSNELLPAAD 551
           F++D+V  VL +              +C  Y    +    + L+ ++L  DS E LP   
Sbjct: 416 FIVDKVTKVLLSYNVKRQDLPSIVTDICKFYHMKRRSRKDAPLLKSQLLMDSLENLPVRA 475

Query: 552 SKQALRYYRYVQAARD 567
           SK  +R     +A +D
Sbjct: 476 SKDRVRSLEVAKALQD 491


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,519
Number of Sequences: 5004
Number of extensions: 96559
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 7
length of query: 588
length of database: 2,362,478
effective HSP length: 77
effective length of query: 511
effective length of database: 1,977,170
effective search space: 1010333870
effective search space used: 1010333870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)