GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000054-TA|BGIBMGA000054-PA|IPR012464|Protein of unknown
function DUF1676
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0236 + 23825368-23825763,23826229-23828667                       31   3.4  

>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 380 MPKVVAPNIPQKVPLANIGNVA 401
           +P VVAP +P   P AN+G+VA
Sbjct: 909 VPPVVAPAVPPPAPAANVGDVA 930


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,825
Number of Sequences: 37544
Number of extensions: 601173
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 1
length of query: 588
length of database: 14,793,348
effective HSP length: 86
effective length of query: 502
effective length of database: 11,564,564
effective search space: 5805411128
effective search space used: 5805411128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)