GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000054-TA|BGIBMGA000054-PA|IPR012464|Protein of unknown
function DUF1676
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          31   2.6  

>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 451 LRVSAVKLKETNRVQTETDLVKQQQQILAANDPDTIAAEKFYGFLLDRVDAVLATIGASE 510
           LR+   +    NRV T    +K  + ++    PD+   E F    ++ +D+VL+ IG  +
Sbjct: 593 LRLFNPRANPDNRVPTVNHDIKDAKHLVLPYAPDSPTGEDFSTDTMNIIDSVLSRIGKDD 652

Query: 511 TG 512
            G
Sbjct: 653 DG 654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,940
Number of Sequences: 59808
Number of extensions: 676136
Number of successful extensions: 1124
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 1
length of query: 588
length of database: 16,821,457
effective HSP length: 86
effective length of query: 502
effective length of database: 11,677,969
effective search space: 5862340438
effective search space used: 5862340438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)