GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000054-TA|BGIBMGA000054-PA|IPR012464|Protein of unknown
function DUF1676
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30600.1 68417.m04341 signal recognition particle receptor al...    32   0.92 
At3g21820.1 68416.m02751 SET domain-containing protein contains ...    30   3.7  
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote...    30   4.9  
At5g43130.1 68418.m05265 transcription initiation factor IID (TF...    29   6.5  
At4g25580.1 68417.m03686 stress-responsive protein-related conta...    29   8.6  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   8.6  
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    29   8.6  

>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
           subunit family protein similar to Signal recognition
           particle receptor alpha subunit (SR-alpha) (Docking
           protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
           similar to Signal recognition particle receptor alpha
           subunit  (SR-alpha) (Docking protein alpha) (DP-alpha)
           (SP:P06625) [Canis familiaris};  contains Pfam PF04086:
           Signal recognition particle, alpha subunit, N-terminal;
           contains Pfam PF00448: SRP54-type protein, GTPase domain
          Length = 634

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 49  RTGHQLWDNVLNQCT--AEPSVSCLQKNFFWYLDDRFRMNNDLKVSDSVCFKRNNVDLDR 106
           R G +  D++ N+ +  AEP+    +KN  W  DD     + L  +DS+    NN  +D 
Sbjct: 230 RGGVRKTDSIGNKSSKVAEPAKKATKKNRVW--DDAAPKQSKLDFTDSIDENGNNDHVDI 287

Query: 107 VSADDG 112
           V+AD G
Sbjct: 288 VAADQG 293


>At3g21820.1 68416.m02751 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 473

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 321 DWELSGPGLGSEYLGSDIHRNAIASFKPHVNDANDI 356
           DWE S   L +      I R A+  F  H ND NDI
Sbjct: 194 DWESSHSLLCTGERSESISREALGEFIKHANDTNDI 229


>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 293 VYGHQTHGSVLVKNHGQNSAPGFEHYPQDWE 323
           VY + ++GS+ ++ HG+N+  G  H P +WE
Sbjct: 412 VYDYDSNGSLSLRLHGKNADEG--HVPLNWE 440


>At5g43130.1 68418.m05265 transcription initiation factor IID
           (TFIID) component TAF4 family protein weak similarity to
           SP|O00268 Transcription initiation factor TFIID 135 kDa
           subunit {Homo sapiens}; contains Pfam profile PF05236:
           Transcription initiation factor TFIID component TAF4
           family
          Length = 712

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 390 QKVPLANIGNVARPVGPPNINPYNRNKK 417
           QK+       V  PV P N+NP NRN K
Sbjct: 51  QKMSSQQARGVEPPVNPMNVNPINRNPK 78


>At4g25580.1 68417.m03686 stress-responsive protein-related contains
           weak similarity to Low-temperature-induced 65 kDa
           protein (Desiccation-responsive protein 29B)
           (Swiss-Prot:Q04980) [Arabidopsis thaliana]
          Length = 626

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 301 SVLVKN-HGQNSAPGFEHYPQDWELSGPGLGSEYLGSDIHRNAIASFKPHVNDANDINAW 359
           +VL K+ HG     G EH P D +L       +Y  + +H  A A  K H+    +I   
Sbjct: 51  NVLTKHGHGHEHDRG-EHIPDDHDLDQEDDEDDYNDNQLHGGAPARGKAHIPVKEEI--- 106

Query: 360 GLGLPPGQSMNVGEYSSSNLMPKVVAPNIPQKV---PLANIGNVARPV--GPPNINPYN 413
              +PPG S      SSS+  P      +  +    P+ + G   +    G P + P+N
Sbjct: 107 ---VPPG-SKAFPVVSSSHTKPSEPVRGVGHEAMSRPIKHSGVPEKEERRGAPTLTPHN 161


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/48 (31%), Positives = 18/48 (37%)

Query: 364 PPGQSMNVGEYSSSNLMPKVVAPNIPQKVPLANIGNVARPVGPPNINP 411
           PP          S  + P    P  P   P ANI N  +P  PP + P
Sbjct: 659 PPPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPPPLPP 706


>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 381 PKVVAPNIPQKVPLANIGNVARPVGPPNINPYNRNKKTTTKDP 423
           P  +A N+P+  P A      RP+G P + P ++  + T   P
Sbjct: 561 PPNLALNLPRPPPSAQYPGAPRPLGVPMMQPMHQQHQLTMPGP 603


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,695
Number of Sequences: 28952
Number of extensions: 493827
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 9
length of query: 588
length of database: 12,070,560
effective HSP length: 85
effective length of query: 503
effective length of database: 9,609,640
effective search space: 4833648920
effective search space used: 4833648920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)