Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000053-TA|BGIBMGA000053-PA|IPR012464|Protein of unknown
function DUF1676
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ... 31 0.48
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 31 0.48
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 30 0.84
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 29 1.5
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 1.5
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 1.9
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 28 2.6
SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|... 27 4.5
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 27 4.5
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 27 5.9
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 5.9
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 27 5.9
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 7.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 7.9
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 27 7.9
>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 279
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 318 LTHVN-RFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERNS 364
L +VN + + I+ L N +++TS+L +LLK SA++ LK E +S
Sbjct: 211 LCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSSAIDRLKEESSS 258
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 30.7 bits (66), Expect = 0.48
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 348 KLLKKSAVNELKTERNSRNGDASTDDNV-KCNTQYNPDGKPAVCREYR--RKKRDIIDIF 404
++ S +T+R + N +AST DN NT +P + V EY D+F
Sbjct: 127 QMSNNSTTYHRETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTAEYTMPSTSEQSEDLF 186
Query: 405 QNSYRYILSKL 415
N Y +S+L
Sbjct: 187 NNGYSSKVSEL 197
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.9 bits (64), Expect = 0.84
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 315 REKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERNSRNGDASTDD 373
+ K H+ R I + L+ D N K SI I +LK S++ E + E NS +ST+D
Sbjct: 352 QNKRDHLLRLFTWIALEPDLE-DCNTKESIHIDDILKTSSLPEARDESNSDLTPSSTED 409
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 1.5
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 254 SIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNV--DALEIVAGKKEIAEDISSEIPG 311
SIA+++ G+T N + K+ K I L +N+ + V ++E +++ PG
Sbjct: 206 SIANSIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQSPYKSVGIEEEFPSSGNNDTPG 265
Query: 312 TDDREKLTHVNRFDNDIV---EDITLDNDSNWKTSILIGKLLKKSAVNELKTERNSRNGD 368
D ++ N I E + ++ + + LI KL + + + N+ N
Sbjct: 266 LTDSTRIEGAMASKNAIARNEEMLAMEKAGLGRKNSLIRKLGLNRSASMMSRTPNTLNRP 325
Query: 369 ASTDDNVKCNTQYNPDGKPA 388
++ + T+ +P P+
Sbjct: 326 SNYRSHSSMGTRRSPLNSPS 345
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 272 IKENGMKEIKH-RLAKRNVDALEIVAGKKEIAEDISSEIPGTDDREKLTHVNRFDND 327
+ E G+++ +H RL K N DA +K I E +E D+R +L + + + N+
Sbjct: 392 LDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVNE 448
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.9
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 35 DRIFESAYSECLMKFSYV----CLQRKTLSYLKVLNGLSEVSVFGDYVKFVKFNSSKLEE 90
D IFE SE + + + CL K L + G S VSV FV S+ +++
Sbjct: 150 DSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQ 209
Query: 91 DKPPVNTTDTAQLASLIDEAVDNFFATHTLRV 122
K ++ + Q+ SLID + FF T +L++
Sbjct: 210 GKKITHSKFSDQMESLIDN--EAFFQTKSLKL 239
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 2.6
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 LQRKTLSYLKVLNGLSEVSVFGDYVKFVKFNSSKLEEDK----PPVNTTDTAQLASLIDE 109
LQ+K +S +K L+ S+ + +N S LE+ K PP+ D+ + + I
Sbjct: 294 LQKKDVS-IKNLSSSSKYIFWLAIATLPWYNWSILEKSKIKILPPILIRDSLKYSKPIMS 352
Query: 110 AVDNFFATHTL---RVKALGRELSMTR 133
V+NFF + L ++ L +E +TR
Sbjct: 353 QVENFFVHYPLIMSKINVLEKEGKLTR 379
>SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 89
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 363 NSRNGDASTDDNVKCNTQY-NPDGKPAVCREYRRKKRDIIDIFQN 406
+S G T ++ TQY K AVCR Y KK I+ +N
Sbjct: 22 SSEKGTKITPSALELITQYLRIYSKEAVCRAYEEKKNSIMSSSEN 66
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 334 LDNDSNWKTSILIGKLLKKSAVNELKTERNS 364
+D D+ W T GK L + V LKTE N+
Sbjct: 43 IDLDAGWGTFERTGKALPERTVERLKTECNA 73
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 307 SEIPGTDDREKLT--HVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERNS 364
S IP +D E+ +++RF+ DI TLD +T IL+ K+ A+ EL +R+
Sbjct: 12 SIIPKHEDGEEYNSIYLSRFEKDISISQTLDFSQFMQTQILL--TAKRKAL-ELGDDRSP 68
Query: 365 RNGD 368
N D
Sbjct: 69 INND 72
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 304 DISSEIPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSAVNELKTERN 363
DI++++ DDRE+LT + F+ + +E+ + S+++ I K KK N K ++N
Sbjct: 402 DIANQL---DDREELTEITSFNWETLEE---QSQSDYE----IDKKKKKKKKNNKKKKKN 451
Query: 364 SR 365
R
Sbjct: 452 KR 453
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 240 RSILEKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEI--KHRLAKRNVD--ALEIV 295
+S+ E+E+ +P+V + V N K N + K+ K++ K L ++ D LE +
Sbjct: 71 KSVSEEEQDEPLVEGESPIVSTNKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLEGL 130
Query: 296 AGKKEIAEDI 305
K I +DI
Sbjct: 131 ESSKNIDDDI 140
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 68 LSEVSVFGDYVKFVKFNSSKLEEDKPPVNTTDTAQLASLIDEAVDN 113
+S++ + KF NS +L+ D+P ++ T +L L+ AV+N
Sbjct: 732 MSDIELHNLCCKFPSINSFQLK-DEPWMDATKVRKLKKLLTNAVEN 776
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 359 KTERNSRNGDASTDDNVKCNTQYNPDG 385
+TE S NGD DD+ K + DG
Sbjct: 15 ETESESANGDTKQDDSKKSQVEEEEDG 41
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 7.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 303 EDISSEIPGTDDREKLTHVNR-------FDNDIVEDITLDNDSNWKTSILIGKLLKKSAV 355
ED+ IP R+K +NR F+N ++DI ++ SN + SA+
Sbjct: 58 EDMRDNIPIVSGRKKTVRLNRLQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAI 117
Query: 356 NE 357
NE
Sbjct: 118 NE 119
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,037
Number of Sequences: 5004
Number of extensions: 75420
Number of successful extensions: 249
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 16
length of query: 493
length of database: 2,362,478
effective HSP length: 76
effective length of query: 417
effective length of database: 1,982,174
effective search space: 826566558
effective search space used: 826566558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 56 (26.6 bits)
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