Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000053-TA|BGIBMGA000053-PA|IPR012464|Protein of unknown
function DUF1676
(493 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 32 0.80
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 31 2.5
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 31 2.5
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical pr... 29 7.5
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 29 9.9
Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical pr... 29 9.9
Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical pr... 29 9.9
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 29 9.9
AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical... 29 9.9
AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical... 29 9.9
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 29 9.9
AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor medi... 29 9.9
AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor medi... 29 9.9
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 32.3 bits (70), Expect = 0.80
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 425 VANPKYKIVNGVKYVYQ---PFRASQKVKIIAAEDFNKGEIMEGAVES---RMNRKKFNR 478
V P V+G KY +Q FR ++K KI+ EDF+ E E VE+ M +KK +
Sbjct: 131 VTGPAGVNVSGSKYRHQLLSRFRKNRKPKIVVGEDFDSKE-TEKLVEAPAVAMEKKKQRK 189
Query: 479 IKDNVNETMDD 489
+ N N D
Sbjct: 190 QRKNKNRKQKD 200
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
protein B0024.8 protein.
Length = 1185
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 239 SRSILEKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHR 283
S S E KR PI S S++ K N N I+K+ +K ++ R
Sbjct: 544 STSSWEAPKRPPISPSEKSSISATKKEVNNNHIVKKGNLKSMRAR 588
>Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical
protein F59B2.5 protein.
Length = 468
Score = 31.1 bits (67), Expect = 1.9
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 261 INGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIAEDISSEIPGTDDREKLTH 320
I T+N E ++ + ++ RL + D + +K +A+D+S E+ +DRE L
Sbjct: 158 IGWATSNKREFLR----RSLQARLIRLYNDIRDFTNAQK-LAQDLSKELKKLEDRELLIE 212
Query: 321 VNRFDNDIVEDITLDNDSNWKTSILIGKLLKKSA 354
V+ ++ L+N + KT++L K SA
Sbjct: 213 VSVEESK--SSFNLNNLAKAKTALLTAKTNTNSA 244
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 46 LMKFSYVCLQRKTLSYLKVLNGLSEVSVFGDYVKFVKFNSSKLEEDKPPVN 96
L KF + +++ Y+K LNGL E + G V++++ ++ E+ VN
Sbjct: 77 LNKFDWKVIKKSRDEYIKRLNGLYESGLKGSSVEYIRGRATFAEDGTVEVN 127
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 46 LMKFSYVCLQRKTLSYLKVLNGLSEVSVFGDYVKFVKFNSSKLEEDKPPVN 96
L KF + +++ Y+K LNGL E + G V++++ ++ E+ VN
Sbjct: 91 LNKFDWKVIKKSRDEYIKRLNGLYESGLKGSSVEYIRGRATFAEDGTVEVN 141
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 240 RSILEKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKK 299
R E E K + T+ +TV G T +NE++++ K K R R D +E G K
Sbjct: 308 RKTAEAETNKYLTTNKVATVDSMG--TISNELLQDIWPKTNKWRRVARVEDNIEDSEGSK 365
Query: 300 EIAEDISSEI 309
++ +++ E+
Sbjct: 366 KLDKEVEREV 375
>Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical
protein M28.2 protein.
Length = 681
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 272 IKENGMKEIKHRLAKRNVDAL-EIVAGKKEIAEDISSEIPGTDDREKLTHVNRFDND 327
+ NG ++ + AL EI + K AED+ I GT R LT VN FD+D
Sbjct: 188 VLSNGKNQLTCEVKSSTSQALAEIRSFIKNYAEDV---IDGTTTRVGLTAVNNFDSD 241
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 29.1 bits (62), Expect = 7.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 356 NELKTERNSRNGDASTDDNVKCNTQYNPDGKPAVCREYRRKKR 398
N + N G S+D N CN Q+N G +V E +R
Sbjct: 833 NGYQNSYNPNQGPTSSDPNYGCNPQFNHYGSRSVYHEDHSSQR 875
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 29.1 bits (62), Expect = 7.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 356 NELKTERNSRNGDASTDDNVKCNTQYNPDGKPAVCREYRRKKR 398
N + N G S+D N CN Q+N G +V E +R
Sbjct: 837 NGYQNSYNPNQGPTSSDPNYGCNPQFNHYGSRSVYHEDHSSQR 879
>Z73906-4|CAA98117.1| 508|Caenorhabditis elegans Hypothetical
protein D2030.3 protein.
Length = 508
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 335 DNDSNWKTSILIGKLLKKSAVNELKTERNSRNGDASTDD 373
+++S+ + + K KKS VN++KT N G+AS DD
Sbjct: 464 NSESSTTATSTVAKKKKKSVVNDVKT--NLLEGEASVDD 500
>Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical
protein C07E3.4 protein.
Length = 535
Score = 29.1 bits (62), Expect = 7.5
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 243 LEKEKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKE-- 300
+EK+++K ++ + T+R K+T+A+ K+ G K + A + ++ +
Sbjct: 1 MEKKEKKSVIQRVKKTLRQRSKSTDASSEQKK-GTKTVDDAEAPSKITRVKAAITNRTRS 59
Query: 301 --IAEDISSEIPGTDDREKLTHVN-RFDNDIVEDITLDND--SNWKTSILIGKLLKKSAV 355
I IS E T R N + N ++ + ++ D + +T L+ +KK +
Sbjct: 60 IGIKISISKECNTTTSRSHSRESNQKTKNSVLSSVDMEEDPEAPVQTLDLMMIEIKKEEL 119
Query: 356 NELK-TERNSRNGDASTDDNVKCNTQYNPDGKPAVCREYRRKKRD 399
E K E+ +D + + + K +E R+ R+
Sbjct: 120 KEKKEKEKTDEEKRERKEDKREDKKEEKKEDKKEEKKEVRKDCRE 164
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 28.7 bits (61), Expect = 9.9
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 284 LAKRNVDALEIVAGKKEIAEDISSEIPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTS 343
L +N IV KK++ S ++ G E+ + R +I+ T D DS K +
Sbjct: 123 LTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEERDRKIARLVEEILGLKTFDKDSVAKFA 182
Query: 344 ILIGKLLKKSAVNELKTE 361
L K L + +N KTE
Sbjct: 183 ALNTKSLAELKING-KTE 199
>Z81455-2|CAD54123.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 298 KKEIAEDISSEIPGTDDREKLTHVN---RFDNDIVEDIT 333
++E D++ E P +++ +VN RFDND++E+ T
Sbjct: 139 RRESTPDVTVEAPEDENKNDDRYVNGGVRFDNDVIEEGT 177
>Z81455-1|CAB03807.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 298 KKEIAEDISSEIPGTDDREKLTHVN---RFDNDIVEDIT 333
++E D++ E P +++ +VN RFDND++E+ T
Sbjct: 186 RRESTPDVTVEAPEDENKNDDRYVNGGVRFDNDVIEEGT 224
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 28.7 bits (61), Expect = 9.9
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 284 LAKRNVDALEIVAGKKEIAEDISSEIPGTDDREKLTHVNRFDNDIVEDITLDNDSNWKTS 343
L +N IV KK++ S ++ G E+ + R +I+ T D DS K +
Sbjct: 123 LTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEERDRKIARLVEEILGLKTFDKDSVAKFA 182
Query: 344 ILIGKLLKKSAVNELKTE 361
L K L + +N KTE
Sbjct: 183 ALNTKSLAELKING-KTE 199
>AL032637-24|CAD54171.1| 745|Caenorhabditis elegans Hypothetical
protein B0399.1b protein.
Length = 745
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 298 KKEIAEDISSEIPGTDDREKLTHVN---RFDNDIVEDIT 333
++E D++ E P +++ +VN RFDND++E+ T
Sbjct: 139 RRESTPDVTVEAPEDENKNDDRYVNGGVRFDNDVIEEGT 177
>AL032637-23|CAA21625.2| 792|Caenorhabditis elegans Hypothetical
protein B0399.1a protein.
Length = 792
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 298 KKEIAEDISSEIPGTDDREKLTHVN---RFDNDIVEDIT 333
++E D++ E P +++ +VN RFDND++E+ T
Sbjct: 186 RRESTPDVTVEAPEDENKNDDRYVNGGVRFDNDVIEEGT 224
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 246 EKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIAEDI 305
E P V I S+ + + T + I E MK+I ++NV +LE V K EI+ +
Sbjct: 62 EAPAPPVIVINSSTKEEQEATQTDRI--EGQMKKIDSVFDEQNVASLEGVNSKNEISGSV 119
Query: 306 SS 307
SS
Sbjct: 120 SS 121
>AC006695-8|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 246 EKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIAEDI 305
E P V I S+ + + T + I E MK+I ++NV +LE V K EI+ +
Sbjct: 13 EAPAPPVIVINSSTKEEQEATQTDRI--EGQMKKIDSVFDEQNVASLEGVNSKNEISGSV 70
Query: 306 SS 307
SS
Sbjct: 71 SS 72
>AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 246 EKRKPIVTSIASTVRINGKTTNANEIIKENGMKEIKHRLAKRNVDALEIVAGKKEIAEDI 305
E P V I S+ + + T + I E MK+I ++NV +LE V K EI+ +
Sbjct: 62 EAPAPPVIVINSSTKEEQEATQTDRI--EGQMKKIDSVFDEQNVASLEGVNSKNEISGSV 119
Query: 306 SS 307
SS
Sbjct: 120 SS 121
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,308
Number of Sequences: 27539
Number of extensions: 397748
Number of successful extensions: 1346
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 22
length of query: 493
length of database: 12,573,161
effective HSP length: 84
effective length of query: 409
effective length of database: 10,259,885
effective search space: 4196292965
effective search space used: 4196292965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 61 (28.7 bits)
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