GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000052-TA|BGIBMGA000052-PA|IPR012338|Penicillin-binding
protein, transpeptidase fold, IPR012464|Protein of unknown function
DUF1676
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    31   0.10 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    29   0.72 

>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 247

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 42 LSKQYPGNPEEKLNRFLLYRLQDYLDGHSLKYKLLDPQTTKQ 83
          LSKQ     ++  N  L   L D+L+G +   +++DP+T +Q
Sbjct: 53 LSKQIKEGADQLANHELAIYLPDFLNGETASIEMIDPKTIEQ 94


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 803

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 43 SKQYPGNPEEKLNRFLLYRLQDYLDGHSLKYKLLDPQTTKQAMDMAKGDPESIGR 97
          SK  P   ++KL R L + L+       +  +LL P     ++D A   P S GR
Sbjct: 3  SKIRPSADDKKLQRVLYFFLERVRAAKDVSGQLLSPLIDNASVDTASVSPSSNGR 57


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,345
Number of Sequences: 5004
Number of extensions: 15649
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 222
length of database: 2,362,478
effective HSP length: 70
effective length of query: 152
effective length of database: 2,012,198
effective search space: 305854096
effective search space used: 305854096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)