Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000051-TA|BGIBMGA000051-PA|IPR012464|Protein of unknown
function DUF1676
         (248 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.41 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.95 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 12/27 (44%), Positives = 12/27 (44%)

Query: 11  AAVVGLPNPEPKPTEPVEATGRAKVDC 37
           A   GLP   P P      TGRA  DC
Sbjct: 267 AGAGGLPPQVPSPRSQRRYTGRATCDC 293


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 19  PEPKPTEPVEATGRAKVDCNGGIF 42
           PEP   EPV   GR    C G ++
Sbjct: 90  PEPTCDEPVHRPGRCCKTCPGDLY 113


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 78  KENETKPDFAAELARALPSKPDERIDKYLLYSL 110
           K N  + D+ A L   +  K DE +D  + Y L
Sbjct: 244 KRNPKEADYPAPLYELIDRKYDENVDYQVRYWL 276


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 16  LPNPEPKPTEPVEA 29
           +P PEP+PT+  E+
Sbjct: 396 VPTPEPQPTQTTES 409


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 220 HSHSHSTAHEDVGGYGHSGYGRNL 243
           HSH+H   H+ +    H G G +L
Sbjct: 361 HSHAHPMHHDMLPETMHMGMGPSL 384


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 220 HSHSHSTAHEDVGGYGHSGYGRNL 243
           HSH+H   H+ +    H G G +L
Sbjct: 361 HSHAHPMHHDMLPETMHMGMGPSL 384


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)

Query: 228 HEDVGGYGHSGYG 240
           H D  GYG   YG
Sbjct: 192 HHDAAGYGLRNYG 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,005
Number of Sequences: 317
Number of extensions: 1704
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 248
length of database: 114,650
effective HSP length: 55
effective length of query: 193
effective length of database: 97,215
effective search space: 18762495
effective search space used: 18762495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)