Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000051-TA|BGIBMGA000051-PA|IPR012464|Protein of unknown
function DUF1676
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    29   0.63 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   1.9  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   4.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.5  
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   5.9  

>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 208 TTYEIVSKPVYTHSHSHSTAHEDVGGYGHS 237
           +T    SKP   H+H H T HE+   Y  S
Sbjct: 54  STQNPTSKPKSRHAHFHETVHENPSEYSRS 83


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 56  EKLN-GKQELKLLPGVSIVKEDLKENETKPDFAAELARALPSKPDE 100
           +KLN  K E K      +    LKENE KP F A+    LPSK  E
Sbjct: 492 KKLNVPKFEFKPTATADVQTNRLKENEPKPTFFAQ----LPSKTQE 533


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 47  LKIEAISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARALPSKPDER 101
           ++I + S + + +G ++  +L   S  + D   N+T+  F  E A+  PSKP  R
Sbjct: 262 IEISSSSAIARTSGDRKDDVLFDTSTQRRD---NQTREMFIQEQAQLFPSKPSLR 313


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 81  ETKPDFAAELARALPSKPDERID 103
           ++KP   AE+ RA PSK D ++D
Sbjct: 304 QSKPALMAEVKRASPSKGDIKLD 326


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 66   LLPGVSIVKEDLKENETKPDFAAELARALPSKPDERIDKYLLYSLGNYLDSHTVRLRLLD 125
            +LP     KED K  E   +        L    D+  +K+L Y   +Y +S  V+L  LD
Sbjct: 1045 VLPPKISTKEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLD 1104


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 113 YLDSHTVRLRLLDDGAAEEARALV 136
           YL+  TVRL+L D    E  R+L+
Sbjct: 54  YLEDRTVRLQLWDTAGQERFRSLI 77


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 43  SPTCLKIEAISMLE-KLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARALPSKPDER 101
           S T L     SMLE   NGK+E    P V+    D  +   K D  +E  R     P E 
Sbjct: 44  SLTLLSSFTSSMLELPNNGKEENHRRPSVARSSSDRSKASAKEDLFSEAFRMAEQPPAEA 103

Query: 102 I 102
           +
Sbjct: 104 L 104


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,639
Number of Sequences: 5004
Number of extensions: 32679
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 8
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)