Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000051-TA|BGIBMGA000051-PA|IPR012464|Protein of unknown
function DUF1676
(248 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 29 2.7
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12) 28 6.3
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 28 6.3
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 28 6.3
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 28 6.3
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 28 6.3
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 6.3
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 47 LKIEAISMLEKLNGKQELKLLPGVSIVKEDLKENE 81
L++E I +LEKL K L+LL +S++KED + E
Sbjct: 4702 LELEGIPILEKLPEKDRLQLLKEISLLKEDSRTVE 4736
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 66 LLPGVSIVKEDLKENETKPDFAAELARALPSKPDERIDKYLLYSLGNYLDSHTVRLR 122
LL V + E K N ++ F + R +P+E +DK +L L N D V +R
Sbjct: 164 LLNAVEELMETSKFNGSEERFFTIVERCASKRPEELLDKVVLPYLSNISDDPDVTVR 220
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 35 VDCNGGIFSPTCLKIEA--ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELAR 92
VD G C E+ + M K+ GK LKL G + +E + K EL R
Sbjct: 1 VDSRGSPGRSRCAFDESGCLGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKR 60
Query: 93 A-LPSKPDERID 103
+ LP + +D
Sbjct: 61 SRLPGRSSNAVD 72
>SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 90 LARALPSKPDERIDKYLLYSLGNYLDSHTVRLRLLDDGA 128
+A L SKPD LLYS+G+ D L++ DGA
Sbjct: 45 IASGLKSKPDNEQVSILLYSMGSCADDILATLKI--DGA 81
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 52 ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARA-LPSKPDERID 103
+ M K+ GK LKL G + +E + K EL R+ LP + +D
Sbjct: 63 LGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKRSRLPGRSSNAVD 115
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 52 ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARA-LPSKPDERID 103
+ M K+ GK LKL G + +E + K EL R+ LP + +D
Sbjct: 9 LGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKRSRLPGRSSNAVD 61
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 52 ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARA-LPSKPDERID 103
+ M K+ GK LKL G + +E + K EL R+ LP + +D
Sbjct: 63 LGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKRSRLPGRSSNAVD 115
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 90 LARALPSKPDERIDKYLLYSLGNYLDSHTVRLRLLDDGA 128
+A L SKPD LLYS+G+ D L++ DGA
Sbjct: 27 IASGLKSKPDNEQVSILLYSMGSCADDILATLKI--DGA 63
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 52 ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARA-LPSKPDERID 103
+ M K+ GK LKL G + +E + K EL R+ LP + +D
Sbjct: 62 LGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKRSRLPGRSSNAVD 114
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 52 ISMLEKLNGKQELKLLPGVSIVKEDLKENETKPDFAAELARA-LPSKPDERID 103
+ M K+ GK LKL G + +E + K EL R+ LP + +D
Sbjct: 121 LGMQPKMGGKLHLKLNIGTRPIANKYREGKMKSTLKRELKRSRLPGRSSNAVD 173
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 16 LPNPEPKPTEPVEATGRAKVDCNGGIFSPTCLKIEAISMLEKLNGKQELKLLPGVSIVKE 75
+P+P+ P PV A C G ++A+S L+KL+ + + VK+
Sbjct: 216 IPSPDTIPQAPVAAAKTVYEPCMG-----QNSVLQAVSQLQKLSEGTTIPTVSEAQGVKK 270
Query: 76 DLKENETKPDF 86
+ ++ KP F
Sbjct: 271 ERRKKAAKPKF 281
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 22 KPTEPVEATGRAKVDCNGGIFSPTCLKIEAISMLEKLNGK 61
KP +P +A V C G CL ++ +S+ E+L+ K
Sbjct: 514 KPPKPADAVRLVDV-CLGDSLDEVCLSMDTLSLSEELSNK 552
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,590,796
Number of Sequences: 59808
Number of extensions: 233035
Number of successful extensions: 523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 12
length of query: 248
length of database: 16,821,457
effective HSP length: 80
effective length of query: 168
effective length of database: 12,036,817
effective search space: 2022185256
effective search space used: 2022185256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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