GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000051-TA|BGIBMGA000051-PA|IPR012464|Protein of unknown
function DUF1676
         (248 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.0  

>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 4  MYILTLAAAVVGLPNPEPKPTEPVEATGRAKVDCNGGI 41
          ++++   + +   P PEP P EP EA   A+ D   GI
Sbjct: 10 VFMVVYISYIYAAPEPEPAP-EP-EAEADAEADPEAGI 45


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 207 STTYEIVSKPVYTHSHSHSTAHEDVGGY 234
           S   E+    V  H   HST H   G Y
Sbjct: 180 SNEVELPQFRVLGHRQRHSTIHLSTGNY 207


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 212 IVSKPVYTHSHSHSTAHEDVGGYGHSGY 239
           I + P + HSH+ +  H+      HS Y
Sbjct: 426 IHATPHHHHSHAATPHHQHSTPLAHSSY 453


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,315
Number of Sequences: 429
Number of extensions: 1833
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 140,377
effective HSP length: 56
effective length of query: 192
effective length of database: 116,353
effective search space: 22339776
effective search space used: 22339776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)