Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000050-TA|BGIBMGA000050-PA|IPR012464|Protein of unknown
function DUF1676
         (174 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52410.2 68418.m06502 expressed protein                             29   2.3  
At5g52410.1 68418.m06503 expressed protein                             29   2.3  
At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase, pu...    27   5.3  
At5g62630.1 68418.m07861 expressed protein                             27   7.0  

>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 20  QGEDEGK--LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKKY 71
           Q EDE +  L L + + VE++A    +   K +    RE A+  +EARG+ +KY
Sbjct: 570 QVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 623


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 20  QGEDEGK--LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKKY 71
           Q EDE +  L L + + VE++A    +   K +    RE A+  +EARG+ +KY
Sbjct: 319 QVEDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 372


>At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A1 GI:5533309 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 21  GEDEGKLELFSGVFVEKDATGEDKLNVKFDPGE 53
           G  EGKL + + VF       E KL + FDP +
Sbjct: 117 GNKEGKLAVQTNVFTNGKGNREQKLALWFDPSK 149


>At5g62630.1 68418.m07861 expressed protein
          Length = 696

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 13  CTAAPGTQGEDEGKLELFSGVFVEKDATGEDKLNVKFDPG 52
           CTA  G    +  K + F+G  V +D + +D+ +VK   G
Sbjct: 163 CTAFGGPSQTNNNKTKCFNGEPVNRDTSDDDEDDVKTPKG 202


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.136    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,247
Number of Sequences: 28952
Number of extensions: 65099
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 4
length of query: 174
length of database: 12,070,560
effective HSP length: 76
effective length of query: 98
effective length of database: 9,870,208
effective search space: 967280384
effective search space used: 967280384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)