GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000050-TA|BGIBMGA000050-PA|IPR012464|Protein of unknown
function DUF1676
         (174 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004D5000 Cluster: Apolipoprotein-L6 (Apolipoprotei...    33   4.8  
UniRef50_Q8AB41 Cluster: Putative uncharacterized protein; n=1; ...    32   8.4  

>UniRef50_UPI00004D5000 Cluster: Apolipoprotein-L6 (Apolipoprotein
          L-VI) (ApoL-VI).; n=1; Xenopus tropicalis|Rep:
          Apolipoprotein-L6 (Apolipoprotein L-VI) (ApoL-VI). -
          Xenopus tropicalis
          Length = 278

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 19 TQGEDEGKLELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKKYTP 73
          T+ E E K E   G  +E+D T   K NVK    +L E  +TF +  G++++  P
Sbjct: 1  TKSEQESKTERTIGTTLEEDTTLLKK-NVKLQCKDLEEKLKTFVKELGEVQETLP 54


>UniRef50_Q8AB41 Cluster: Putative uncharacterized protein; n=1;
          Bacteroides thetaiotaomicron|Rep: Putative
          uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 264

 Score = 31.9 bits (69), Expect = 8.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 12 ACTAAPGTQGEDEGKLELFSGVFVEKDATGEDKLNVKFD 50
          +CT        +E + E+F+G  ++  +TG ++LN+KFD
Sbjct: 19 SCTDYEVASYPEENETEVFNGTVLDYLSTGNERLNLKFD 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.313    0.136    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,790,589
Number of Sequences: 1657284
Number of extensions: 3034358
Number of successful extensions: 3783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3782
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 575,637,011
effective HSP length: 95
effective length of query: 79
effective length of database: 418,195,031
effective search space: 33037407449
effective search space used: 33037407449
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 69 (31.9 bits)