GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000050-TA|BGIBMGA000050-PA|IPR012464|Protein of unknown
function DUF1676
         (174 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.45 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 22  EDEGKLELFSGVFVEK-DATGEDKLNVKFDPGELREA 57
           ED+G  + F     E  +AT E KL  +F+P ++R A
Sbjct: 383 EDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHA 419


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 27   LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKK 70
            L L+S + +   + G  ++ VK    EL E  +  +EA+ K K+
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQ 1089


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 27   LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKK 70
            L L+S + +   + G  ++ VK    EL E  +  +EA+ K K+
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQ 1089


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 27   LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKK 70
            L L+S + +   + G  ++ VK    EL E  +  +EA+ K K+
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQ 1089


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 27   LELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQEARGKIKK 70
            L L+S + +   + G  ++ VK    EL E  +  +EA+ K K+
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQ 1089


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.136    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,939
Number of Sequences: 317
Number of extensions: 547
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 114,650
effective HSP length: 53
effective length of query: 121
effective length of database: 97,849
effective search space: 11839729
effective search space used: 11839729
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)