GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000050-TA|BGIBMGA000050-PA|IPR012464|Protein of unknown
function DUF1676
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.54 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 22  EDEGKLELFSGVFVEK-DATGEDKLNVKFDPGELREA 57
           ED+G  + F     E   AT E KL  +F+P ++R+A
Sbjct: 363 EDKGMYQCFVRNDQESAQATAELKLGGRFEPPQIRQA 399


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 22  EDEGKLELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQE 63
           +  G ++   G+  +KD T +D L+   +P +  + +  FQ+
Sbjct: 203 DKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYEKRSTDFQD 244


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 22  EDEGKLELFSGVFVEKDATGEDKLNVKFDPGELREAARTFQE 63
           +  G ++   G+  +KD T +D L+   +P +  + +  FQ+
Sbjct: 203 DKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYEKRSTDFQD 244


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.136    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,975
Number of Sequences: 429
Number of extensions: 566
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)